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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4170-RD through 18771 annotations produced 1 hits



vasa intronic gene (vig):

Annotation Number : CG4170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024183
Gbrowse : chr2L:15064197-15070316 (-) // 100.0 //
Probeset : 1626246_s_at
Accessions : protein= NP_523572; /// NP_723896; /// NP_723897; /// NP_723898;, nucleotide= NM_078848; /// NM_165100; /// NM_165101; /// NM_165102;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005700 // polytene chromosome // inferred from direct assay /// 00
Interpro : 0003729 // mRNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0024183.
BDGP gene expression has embryonic in situ data for vig: 33 pix of staining in 20 body parts.
BioGrid reports that CG4170 interacts with CG7439 CG7439 .
TRiP has 2 RNAi stocks for FBgn0024183 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024183 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain539 274 of 4 2.60Up
Head246 384 of 4 1.20None
Eye279 304 of 4 1.37None
Thoracicoabdominal ganglion360 464 of 4 1.80Up
Salivary gland56 62 of 4 0.28Down
Crop287 124 of 4 1.40Up
Midgut94 83 of 4 0.50Down
Tubule482 274 of 4 2.40Up
Hindgut287 94 of 4 1.40Up
Heart353 364 of 4 1.73Up
Fat body209 294 of 4 1.03None
Ovary126 34 of 4 0.60Down
Testis770 114 of 4 3.80Up
Male accessory glands66 32 of 4 0.30Down
Virgin spermatheca168 73 of 4 0.83Down
Mated spermatheca311 184 of 4 1.53Up
Adult carcass222 224 of 4 1.10None
Larval CNS327 204 of 4 1.61Up
Larval Salivary gland96 114 of 4 0.48Down
Larval midgut65 40 of 4 0.32Down
Larval tubule140 74 of 4 0.70Down
Larval hindgut228 214 of 4 1.12None
Larval fat body144 124 of 4 0.70Down
Larval trachea222 414 of 4 1.09None
Larval carcass207 364 of 4 1.02None
S2 cells (growing)417 124 of 4 2.05Up
Whole fly203 104 of 4

Looking for CG4170-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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