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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4178-RA through 18771 annotations produced 1 hits

Larval serum protein 1 beta (Lsp1beta):

Annotation Number : CG4178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002563
Gbrowse : chr2L:898646-901316 (+) // 99.85 //
Probeset : 1628699_at
Accessions : protein= NP_476624;, nucleotide= NM_057276;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005344 // oxygen transporter activity // inferred from electronic annotation /// 0045735 // nutrient reservoir activity
FlyMine data for FBgn0002563.
BDGP gene expression has embryonic in situ data for Lsp1beta: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0002563 available for purchase.
VDRC has 4 RNAi stocks for FBgn0002563 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 0.50None
Head378 1014 of 4 8.40Up
Eye243 664 of 4 5.39None
Thoracicoabdominal ganglion41 24 of 4 0.90None
Salivary gland9 40 of 4 0.22Down
Crop16 24 of 4 0.40None
Midgut4 20 of 4 0.10Down
Tubule10 31 of 4 0.20Down
Hindgut7 22 of 4 0.20Down
Heart156 164 of 4 3.47Up
Fat body272 2214 of 4 6.04None
Ovary2 11 of 4 0.10Down
Testis5 02 of 4 0.10Down
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca178 164 of 4 3.96Up
Mated spermatheca53 114 of 4 1.18None
Adult carcass375 424 of 4 8.30Up
Larval CNS60 154 of 4 1.34None
Larval Salivary gland7214 4234 of 4159.80Up
Larval midgut285 1714 of 4 6.33None
Larval tubule798 1794 of 417.70Up
Larval hindgut4263 3454 of 494.42Up
Larval fat body11610 12674 of 4257.20Up
Larval trachea2594 17124 of 457.47None
Larval carcass2874 3074 of 463.67Up
S2 cells (growing)6 02 of 4 0.15Down
Whole fly45 94 of 4

Looking for CG4178-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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