Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4180-RB through 18771 annotations produced 1 hits



transcription unit B (l(2)35Bg):

Annotation Number : CG4180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001977
Gbrowse : chr2L:15037732-15038857 (-) // 100.0 //
Probeset : 1627249_a_at
Accessions : protein= NP_524938;, nucleotide= NM_080199;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001977.
TRiP has 1 RNAi stocks for FBgn0001977 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 24 of 4 0.40Down
Head78 44 of 4 0.40Down
Eye89 34 of 4 0.50Down
Thoracicoabdominal ganglion77 04 of 4 0.40Down
Salivary gland145 94 of 4 0.81Down
Crop182 64 of 4 1.00None
Midgut252 84 of 4 1.40Up
Tubule169 194 of 4 0.90None
Hindgut146 84 of 4 0.80Down
Heart213 54 of 4 1.20Up
Fat body216 304 of 4 1.21None
Ovary284 54 of 4 1.60Up
Testis325 74 of 4 1.80Up
Male accessory glands211 54 of 4 1.20Up
Virgin spermatheca87 34 of 4 0.49Down
Mated spermatheca102 44 of 4 0.57Down
Adult carcass193 154 of 4 1.10None
Larval CNS180 44 of 4 1.01None
Larval Salivary gland234 114 of 4 1.31Up
Larval midgut313 164 of 4 1.75Up
Larval tubule464 104 of 4 2.60Up
Larval hindgut233 114 of 4 1.31Up
Larval fat body374 194 of 4 2.10Up
Larval trachea266 264 of 4 1.49Up
Larval carcass512 1284 of 4 2.87None
S2 cells (growing)259 34 of 4 1.45Up
Whole fly178 54 of 4

Looking for CG4180-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime