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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4182-RA through 18771 annotations produced 1 hits



yellow-c (yellow-c):

Annotation Number : CG4182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041713
Gbrowse : chr2L:15035470-15037842 (+) // 100.0 //
Probeset : 1625405_at
Accessions : protein= NP_523570;, nucleotide= NM_078846;
FlyMine data for FBgn0041713.
VDRC has 2 RNAi stocks for FBgn0041713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.10Down
Head758 ± 454 of 4 6.10Up
Eye332 ± 164 of 4 2.66Up
Thoracicoabdominal ganglion15 ± 33 of 4 0.10Down
Salivary gland11 ± 31 of 4 0.10Down
Crop692 ± 274 of 4 5.50Up
Midgut18 ± 22 of 4 0.10Down
Tubule3 ± 10 of 4 0.00Down
Hindgut174 ± 54 of 4 1.40Up
Heart19 ± 14 of 4 0.15Down
Fat body22 ± 53 of 4 0.18Down
Ovary3 ± 10 of 4 0.00Down
Testis10 ± 10 of 4 0.10Down
Male accessory glands10 ± 31 of 4 0.10Down
Virgin spermatheca32 ± 24 of 4 0.26Down
Mated spermatheca52 ± 74 of 4 0.42Down
Adult carcass802 ± 314 of 4 6.40Up
Larval CNS12 ± 04 of 4 0.10Down
Larval Salivary gland25 ± 34 of 4 0.21Down
Larval midgut25 ± 41 of 4 0.20Down
Larval tubule11 ± 11 of 4 0.10Down
Larval hindgut300 ± 174 of 4 2.40Up
Larval fat body18 ± 11 of 4 0.20Down
Larval trachea716 ± 1834 of 4 5.73Up
Larval carcass1766 ± 4904 of 414.14Up
S2 cells (growing)6 ± 00 of 4 0.05Down
Whole fly125 ± 34 of 4

Looking for CG4182-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime