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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4183-RA through 18771 annotations produced 1 hits



heat shock protein hsp26 (Hsp26):

Annotation Number : CG4183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001225
Gbrowse : chr3L:9369517-9370527 (-) // 100.0 //
Probeset : 1635044_at
Accessions : protein= NP_523997;, nucleotide= NM_079273;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001225.
BDGP gene expression has embryonic in situ data for Hsp26: 52 pix of staining in 17 body parts.
Homophila reports that CG4183 is a close match (6e-16) to human gene CMT2F;HMN2B;HSP27;HSPB1 (NP_001531), a gene associated with Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3);Neuropathy, distal hereditary motor, type IIB, 608634 (3).
BioGrid reports that CG4183 interacts with CG4821 CG5315 CG5583 CG7012 CG7855 CG7967 CG8039 CG9188 .
TRiP has 1 RNAi stocks for FBgn0001225 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001225 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 34 of 4 0.10Down
Head75 ± 24 of 4 0.00Down
Eye38 ± 44 of 4 0.02Down
Thoracicoabdominal ganglion75 ± 54 of 4 0.00Down
Salivary gland39 ± 60 of 4 0.02Down
Crop552 ± 344 of 4 0.30Down
Midgut77 ± 14 of 4 0.00Down
Tubule1732 ± 4823 of 4 0.90None
Hindgut226 ± 54 of 4 0.10Down
Heart408 ± 374 of 4 0.22Down
Fat body43 ± 150 of 4 0.02Down
Ovary2749 ± 584 of 4 1.50Up
Testis820 ± 204 of 4 0.40Down
Male accessory glands21 ± 50 of 4 0.00Down
Virgin spermatheca40 ± 50 of 4 0.02Down
Mated spermatheca169 ± 733 of 4 0.09Down
Adult carcass131 ± 323 of 4 0.10Down
Larval CNS381 ± 544 of 4 0.20Down
Larval Salivary gland375 ± 1044 of 4 0.20Down
Larval midgut125 ± 514 of 4 0.07Down
Larval tubule2452 ± 1364 of 4 1.30Up
Larval hindgut242 ± 304 of 4 0.13Down
Larval fat body775 ± 664 of 4 0.40Down
Larval trachea199 ± 604 of 4 0.11Down
Larval carcass642 ± 1844 of 4 0.34Down
S2 cells (growing)444 ± 314 of 4 0.23Down
Whole fly1892 ± 854 of 4

Looking for CG4183-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime