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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4185-RA through 18771 annotations produced 1 hits



NC2beta (NC2beta):

Annotation Number : CG4185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028926
Gbrowse : chr2L:15007818-15008538 (+) // 100.0 //
Probeset : 1632384_at
Accessions : protein= NP_609736;, nucleotide= NM_135892;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0028926.
BioGrid reports that CG4185 interacts with CG5175 CG5466 .
VDRC has 1 RNAi stocks for FBgn0028926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 14 of 4 1.90Up
Head59 ± 54 of 4 1.10None
Eye89 ± 44 of 4 1.73Up
Thoracicoabdominal ganglion73 ± 24 of 4 1.40Up
Salivary gland70 ± 64 of 4 1.36None
Crop57 ± 24 of 4 1.10None
Midgut45 ± 14 of 4 0.90None
Tubule19 ± 03 of 4 0.40Down
Hindgut57 ± 14 of 4 1.10None
Heart43 ± 04 of 4 0.85None
Fat body22 ± 44 of 4 0.44Down
Ovary68 ± 34 of 4 1.30Up
Testis88 ± 44 of 4 1.70Up
Male accessory glands67 ± 44 of 4 1.30Up
Virgin spermatheca20 ± 14 of 4 0.39Down
Mated spermatheca25 ± 44 of 4 0.49Down
Adult carcass42 ± 24 of 4 0.80None
Larval CNS121 ± 114 of 4 2.34Up
Larval Salivary gland74 ± 64 of 4 1.45Up
Larval midgut31 ± 24 of 4 0.61Down
Larval tubule54 ± 24 of 4 1.10None
Larval hindgut43 ± 04 of 4 0.83None
Larval fat body54 ± 34 of 4 1.00None
Larval trachea91 ± 114 of 4 1.77Up
Larval carcass49 ± 44 of 4 0.96None
S2 cells (growing)87 ± 44 of 4 1.70Up
Whole fly51 ± 34 of 4

Looking for CG4185-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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