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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4192-RA through 18771 annotations produced 1 hits



Kekkon-3 (kek3):

Annotation Number : CG4192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028370
Gbrowse : chr2L:15578952-15583026 (+) // 100.0 //
Probeset : 1638725_at
Accessions : protein= NP_001162986; /// NP_523575;, nucleotide= NM_001169515; /// NM_078851;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0028370.
Homophila reports that CG4192 is a close match (2e-11) to human gene ALS;IGFALS (NP_004961), a gene associated with Acid-labile subunit, deficiency of (3).
VDRC has 2 RNAi stocks for FBgn0028370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 54 of 411.60Up
Head21 ± 24 of 4 2.30Up
Eye12 ± 33 of 4 1.31None
Thoracicoabdominal ganglion54 ± 94 of 4 5.90Up
Salivary gland10 ± 31 of 4 1.17None
Crop11 ± 12 of 4 1.30None
Midgut9 ± 10 of 4 1.00None
Tubule9 ± 00 of 4 1.00None
Hindgut8 ± 10 of 4 1.00None
Heart3 ± 11 of 4 0.35None
Fat body11 ± 52 of 4 1.23None
Ovary6 ± 10 of 4 0.70None
Testis8 ± 22 of 4 1.00None
Male accessory glands9 ± 20 of 4 1.00None
Virgin spermatheca8 ± 00 of 4 0.89None
Mated spermatheca7 ± 00 of 4 0.80None
Adult carcass14 ± 41 of 4 1.60None
Larval CNS26 ± 34 of 4 2.89Up
Larval Salivary gland9 ± 02 of 4 0.98None
Larval midgut9 ± 21 of 4 1.05None
Larval tubule8 ± 10 of 4 0.90None
Larval hindgut6 ± 00 of 4 0.74None
Larval fat body11 ± 01 of 4 1.20None
Larval trachea3 ± 10 of 4 0.35Down
Larval carcass14 ± 04 of 4 1.54None
S2 cells (growing)6 ± 10 of 4 0.71None
Whole fly9 ± 12 of 4

Looking for CG4192-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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