FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4194-RA through 18771 annotations produced 1 hits

(CG4194):

Annotation Number : CG4194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025627
Gbrowse : chrX:1962639-1963721 (+) // 99.63 //
Probeset : 1628965_at
Accessions : protein= NP_569975;, nucleotide= NM_130619;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0025627.
BDGP gene expression has embryonic in situ data for EG:22E5.6: 66 pix of staining in 20 body parts.
BioGrid reports that CG4194 interacts with CG5075 CG4845 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.20	Down
Head	6 ± 0	0 of 4	0.30	Down
Eye	6 ± 0	1 of 4	0.35	Down
Thoracicoabdominal ganglion	4 ± 0	0 of 4	0.20	Down
Salivary gland	21 ± 3	0 of 4	1.17	None
Crop	10 ± 2	0 of 4	0.60	None
Midgut	15 ± 2	1 of 4	0.90	None
Tubule	15 ± 1	0 of 4	0.80	None
Hindgut	16 ± 1	1 of 4	0.90	None
Heart	6 ± 1	1 of 4	0.38	Down
Fat body	8 ± 2	0 of 4	0.48	Down
Ovary	10 ± 0	0 of 4	0.60	None
Testis	6 ± 1	0 of 4	0.40	Down
Male accessory glands	15 ± 2	0 of 4	0.90	None
Virgin spermatheca	7 ± 2	0 of 4	0.42	Down
Mated spermatheca	11 ± 2	0 of 4	0.66	None
Adult carcass	14 ± 5	0 of 4	0.80	None
Larval CNS	7 ± 2	1 of 4	0.42	Down
Larval Salivary gland	7 ± 1	0 of 4	0.39	Down
Larval midgut	13 ± 2	2 of 4	0.77	None
Larval tubule	11 ± 0	0 of 4	0.60	None
Larval hindgut	7 ± 1	0 of 4	0.42	Down
Larval fat body	7 ± 1	0 of 4	0.40	Down
Larval trachea	9 ± 1	1 of 4	0.55	None
Larval carcass	9 ± 1	0 of 4	0.54	None
S2 cells (growing)	16 ± 2	3 of 4	0.91	None
Whole fly	18 ± 3	3 of 4

Looking for CG4194-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720