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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4209-RA through 18771 annotations produced 1 hits



chrX:5226777-5228568 (+) // 100.0 // (Calcineurin B):

Annotation Number : CG4209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641460_at
Accessions : protein= , nucleotide= NP_524741;
Pathway : 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephospho
Interpro : 0005955 // calcineurin complex // inferred from sequence or structural similarity /// 0005955 // calcineurin complex //
FlyMine data for full length.
BioGrid reports that CG4209 interacts with CG7930 CG11217 CG9842 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2325 ± 364 of 419.70Up
Head1040 ± 634 of 4 8.80Up
Eye1223 ± 184 of 410.40Up
Thoracicoabdominal ganglion2409 ± 514 of 420.50Up
Salivary gland19 ± 52 of 4 0.16Down
Crop19 ± 04 of 4 0.20Down
Midgut21 ± 24 of 4 0.20Down
Tubule7 ± 02 of 4 0.10Down
Hindgut21 ± 14 of 4 0.20Down
Heart13 ± 24 of 4 0.11Down
Fat body42 ± 304 of 4 0.36Down
Ovary1 ± 00 of 4 0.00Down
Testis14 ± 14 of 4 0.10Down
Male accessory glands21 ± 14 of 4 0.20Down
Virgin spermatheca52 ± 24 of 4 0.44Down
Mated spermatheca68 ± 234 of 4 0.58None
Adult carcass58 ± 54 of 4 0.50Down
Larval CNS1448 ± 694 of 412.30Up
Larval Salivary gland8 ± 22 of 4 0.07Down
Larval midgut28 ± 14 of 4 0.24Down
Larval tubule5 ± 00 of 4 0.00Down
Larval hindgut15 ± 04 of 4 0.13Down
Larval fat body5 ± 01 of 4 0.10Down
Larval trachea23 ± 334 of 4 0.20Down
Larval carcass25 ± 24 of 4 0.21Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly117 ± 104 of 4

Looking for CG4209-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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