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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4212-RA through 18771 annotations produced 1 hits



Rab-protein 14 (Rab14):

Annotation Number : CG4212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015791
Gbrowse : chr2L:14355146-14358400 (+) // 100.0 //
Probeset : 1623737_a_at
Accessions : protein= NP_477171; /// NP_788056; /// NP_788057;, nucleotide= NM_057823; /// NM_176042; /// NM_176043;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015791.
Homophila reports that CG4212 is a close match (1e-12) to human gene KRAS2;NS3;RASK2 (NP_004976), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
TRiP has 2 RNAi stocks for FBgn0015791 available for purchase.
VDRC has 2 RNAi stocks for FBgn0015791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain793 34 of 4 2.50Up
Head586 254 of 4 1.90Up
Eye1153 494 of 4 3.69Up
Thoracicoabdominal ganglion799 224 of 4 2.60Up
Salivary gland320 154 of 4 1.03None
Crop438 144 of 4 1.40Up
Midgut234 24 of 4 0.80Down
Tubule443 144 of 4 1.40Up
Hindgut399 94 of 4 1.30Up
Heart743 414 of 4 2.38Up
Fat body311 414 of 4 1.00None
Ovary367 14 of 4 1.20Up
Testis689 84 of 4 2.20Up
Male accessory glands316 184 of 4 1.00None
Virgin spermatheca283 84 of 4 0.91None
Mated spermatheca298 114 of 4 0.95None
Adult carcass358 64 of 4 1.10Up
Larval CNS353 144 of 4 1.13Up
Larval Salivary gland629 314 of 4 2.02Up
Larval midgut240 134 of 4 0.77Down
Larval tubule693 144 of 4 2.20Up
Larval hindgut307 194 of 4 0.98None
Larval fat body302 114 of 4 1.00None
Larval trachea252 264 of 4 0.81Down
Larval carcass199 114 of 4 0.64Down
S2 cells (growing)367 74 of 4 1.18Up
Whole fly312 124 of 4

Looking for CG4212-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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