FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4214-RB through 18771 annotations produced 1 hits

Syntaxin 5 (Syx5):

Annotation Number : CG4214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011708
Gbrowse : chr2L:16307358-16309273 (+) // 100.0 //
Probeset : 1625607_s_at
Accessions : protein= NP_523582; /// NP_599132;, nucleotide= NM_078858; /// NM_134305;
Pathway : engulfment // inferred from mutant phenotype /// 0007269 // neurotransmitter secretion // inferred from sequence or str
Interpro : 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inf
FlyMine data for FBgn0011708.
BioGrid reports that CG4214 interacts with CG33101 .
TRiP has 1 RNAi stocks for FBgn0011708 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011708 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	442 ± 16	4 of 4	1.30	Up
Head	407 ± 11	4 of 4	1.20	Up
Eye	418 ± 3	4 of 4	1.26	Up
Thoracicoabdominal ganglion	405 ± 20	4 of 4	1.20	Up
Salivary gland	1892 ± 60	4 of 4	5.68	Up
Crop	504 ± 11	4 of 4	1.50	Up
Midgut	422 ± 11	4 of 4	1.30	Up
Tubule	670 ± 33	4 of 4	2.00	Up
Hindgut	413 ± 9	4 of 4	1.20	Up
Heart	403 ± 11	4 of 4	1.21	Up
Fat body	504 ± 13	4 of 4	1.52	Up
Ovary	496 ± 8	4 of 4	1.50	Up
Testis	310 ± 4	4 of 4	0.90	None
Male accessory glands	1102 ± 51	4 of 4	3.30	Up
Virgin spermatheca	632 ± 24	4 of 4	1.90	Up
Mated spermatheca	629 ± 57	4 of 4	1.89	Up
Adult carcass	390 ± 11	4 of 4	1.20	Up
Larval CNS	247 ± 15	4 of 4	0.74	Down
Larval Salivary gland	1370 ± 28	4 of 4	4.11	Up
Larval midgut	469 ± 8	4 of 4	1.41	Up
Larval tubule	633 ± 17	4 of 4	1.90	Up
Larval hindgut	377 ± 16	4 of 4	1.13	None
Larval fat body	532 ± 41	4 of 4	1.60	Up
Larval trachea	322 ± 33	4 of 4	0.97	None
Larval carcass	359 ± 13	4 of 4	1.08	None
S2 cells (growing)	462 ± 3	4 of 4	1.39	Up
Whole fly	333 ± 15	4 of 4

Looking for CG4214-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720