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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4214-RB through 18771 annotations produced 1 hits



Syntaxin 5 (Syx5):

Annotation Number : CG4214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011708
Gbrowse : chr2L:16307358-16309273 (+) // 100.0 //
Probeset : 1625607_s_at
Accessions : protein= NP_523582; /// NP_599132;, nucleotide= NM_078858; /// NM_134305;
Pathway : engulfment // inferred from mutant phenotype /// 0007269 // neurotransmitter secretion // inferred from sequence or str
Interpro : 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inf
FlyMine data for FBgn0011708.
BioGrid reports that CG4214 interacts with CG33101 .
TRiP has 1 RNAi stocks for FBgn0011708 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain442 164 of 4 1.30Up
Head407 114 of 4 1.20Up
Eye418 34 of 4 1.26Up
Thoracicoabdominal ganglion405 204 of 4 1.20Up
Salivary gland1892 604 of 4 5.68Up
Crop504 114 of 4 1.50Up
Midgut422 114 of 4 1.30Up
Tubule670 334 of 4 2.00Up
Hindgut413 94 of 4 1.20Up
Heart403 114 of 4 1.21Up
Fat body504 134 of 4 1.52Up
Ovary496 84 of 4 1.50Up
Testis310 44 of 4 0.90None
Male accessory glands1102 514 of 4 3.30Up
Virgin spermatheca632 244 of 4 1.90Up
Mated spermatheca629 574 of 4 1.89Up
Adult carcass390 114 of 4 1.20Up
Larval CNS247 154 of 4 0.74Down
Larval Salivary gland1370 284 of 4 4.11Up
Larval midgut469 84 of 4 1.41Up
Larval tubule633 174 of 4 1.90Up
Larval hindgut377 164 of 4 1.13None
Larval fat body532 414 of 4 1.60Up
Larval trachea322 334 of 4 0.97None
Larval carcass359 134 of 4 1.08None
S2 cells (growing)462 34 of 4 1.39Up
Whole fly333 154 of 4

Looking for CG4214-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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