FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4220-RA through 18771 annotations produced 2 hits

elbow B (elB):

Annotation Number : CG4220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004858
Gbrowse : chr2L:14391177-14407758 (-) // 100.0 //
Probeset : 1631207_at
Accessions : protein= NP_523566; /// NP_788059; /// NP_995712;, nucleotide= NM_078842; /// NM_176045; /// NM_205990;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004858.
BioGrid reports that CG4220 interacts with CG7056 CG4645 CG4818 CG5009 CG5637 CG7200 CG7548 CG3978 CG3938 CG4491 CG4491 .
VDRC has 3 RNAi stocks for FBgn0004858 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	63 ± 2	4 of 4	2.80	Up
Head	52 ± 5	4 of 4	2.30	Up
Eye	29 ± 2	4 of 4	1.27	None
Thoracicoabdominal ganglion	80 ± 6	4 of 4	3.50	Up
Salivary gland	115 ± 9	4 of 4	5.07	Up
Crop	101 ± 5	4 of 4	4.40	Up
Midgut	37 ± 2	4 of 4	1.60	Up
Tubule	7 ± 0	0 of 4	0.30	Down
Hindgut	137 ± 8	4 of 4	6.00	Up
Heart	25 ± 1	4 of 4	1.12	None
Fat body	9 ± 2	0 of 4	0.42	Down
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	14 ± 1	4 of 4	0.60	Down
Male accessory glands	277 ± 25	4 of 4	12.20	Up
Virgin spermatheca	62 ± 5	4 of 4	2.76	Up
Mated spermatheca	92 ± 14	4 of 4	4.05	Up
Adult carcass	65 ± 9	4 of 4	2.90	Up
Larval CNS	51 ± 8	4 of 4	2.27	Up
Larval Salivary gland	176 ± 13	4 of 4	7.73	Up
Larval midgut	44 ± 2	4 of 4	1.93	Up
Larval tubule	9 ± 0	0 of 4	0.40	Down
Larval hindgut	93 ± 6	4 of 4	4.08	Up
Larval fat body	3 ± 0	0 of 4	0.20	Down
Larval trachea	103 ± 22	4 of 4	4.51	Up
Larval carcass	54 ± 1	4 of 4	2.39	Up
S2 cells (growing)	8 ± 0	0 of 4	0.35	Down
Whole fly	22 ± 0	4 of 4

elbow B (elB):

Annotation Number : CG4220
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004858
Gbrowse : chr2L:14391177-14407758 (-) // 100.0 //
Probeset : 1623877_a_at
Accessions : protein= NP_523566; /// NP_788059; /// NP_995712;, nucleotide= NM_078842; /// NM_176045; /// NM_205990;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0004858.
BioGrid reports that CG4220 interacts with CG7056 CG4645 CG4818 CG5009 CG5637 CG7200 CG7548 CG3978 CG3938 CG4491 CG4491 .
VDRC has 3 RNAi stocks for FBgn0004858 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 3	4 of 4	2.50	Up
Head	21 ± 2	1 of 4	1.60	Up
Eye	12 ± 0	1 of 4	0.96	None
Thoracicoabdominal ganglion	41 ± 4	4 of 4	3.10	Up
Salivary gland	55 ± 5	2 of 4	4.18	Up
Crop	51 ± 3	4 of 4	3.80	Up
Midgut	26 ± 1	0 of 4	2.00	Up
Tubule	13 ± 0	0 of 4	1.00	None
Hindgut	85 ± 2	4 of 4	6.40	Up
Heart	13 ± 2	2 of 4	0.99	None
Fat body	19 ± 5	0 of 4	1.42	None
Ovary	6 ± 0	0 of 4	0.50	Down
Testis	12 ± 3	0 of 4	0.90	None
Male accessory glands	101 ± 9	4 of 4	7.60	Up
Virgin spermatheca	19 ± 4	0 of 4	1.46	None
Mated spermatheca	22 ± 5	1 of 4	1.67	None
Adult carcass	36 ± 5	3 of 4	2.70	Up
Larval CNS	22 ± 4	4 of 4	1.68	Up
Larval Salivary gland	68 ± 5	4 of 4	5.16	Up
Larval midgut	30 ± 2	0 of 4	2.29	Up
Larval tubule	8 ± 2	0 of 4	0.70	None
Larval hindgut	33 ± 5	4 of 4	2.52	Up
Larval fat body	9 ± 2	0 of 4	0.70	None
Larval trachea	38 ± 8	4 of 4	2.86	Up
Larval carcass	25 ± 3	2 of 4	1.94	Up
S2 cells (growing)	11 ± 1	0 of 4	0.85	None
Whole fly	13 ± 1	0 of 4

Looking for CG4220-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720