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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4229-RA through 18771 annotations produced 1 hits



(CG4229):

Annotation Number : CG4229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036639
Gbrowse : chr3L:16549942-16551058 (+) // 99.46 //
Probeset : 1627607_at
Accessions : protein= NP_648903;, nucleotide= NM_140646;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036639.
BDGP gene expression has embryonic in situ data for CG4229: 4 pix of staining in 1 body parts.
BioGrid reports that CG4229 interacts with CG4276 CG5890 .
VDRC has 2 RNAi stocks for FBgn0036639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 30 of 4 0.20None
Head5 ± 20 of 4 0.20Down
Eye2 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion8 ± 00 of 4 0.40None
Salivary gland15 ± 30 of 4 0.69None
Crop9 ± 20 of 4 0.40None
Midgut9 ± 20 of 4 0.40None
Tubule9 ± 10 of 4 0.40Down
Hindgut8 ± 30 of 4 0.40None
Heart1 ± 00 of 4 0.08Down
Fat body14 ± 10 of 4 0.63None
Ovary3 ± 10 of 4 0.10Down
Testis13 ± 10 of 4 0.60None
Male accessory glands12 ± 30 of 4 0.50None
Virgin spermatheca11 ± 20 of 4 0.50None
Mated spermatheca7 ± 10 of 4 0.34Down
Adult carcass5 ± 20 of 4 0.20Down
Larval CNS11 ± 60 of 4 0.52None
Larval Salivary gland12 ± 10 of 4 0.55None
Larval midgut14 ± 40 of 4 0.62None
Larval tubule9 ± 30 of 4 0.40None
Larval hindgut11 ± 10 of 4 0.48None
Larval fat body6 ± 20 of 4 0.30Down
Larval trachea3 ± 20 of 4 0.13Down
Larval carcass15 ± 10 of 4 0.69None
S2 cells (growing)10 ± 10 of 4 0.45None
Whole fly23 ± 40 of 4

Looking for CG4229-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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