FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4237-RA through 18771 annotations produced 1 hits

GTPase-activating protein 69C (Gap69C):

Annotation Number : CG4237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020655
Gbrowse : chr3L:12408125-12410803 (-) // 100.0 //
Probeset : 1641630_at
Accessions : protein= NP_524040;, nucleotide= NM_079316;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : 0005525 // GTP binding // non-traceable author statement /// 0008060 // ARF GTPase activator activity // inferred from s
FlyMine data for FBgn0020655.
BioGrid reports that CG4237 interacts with CG6172 .
VDRC has 3 RNAi stocks for FBgn0020655 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	225 ± 5	4 of 4	1.00	None
Head	216 ± 2	4 of 4	0.90	None
Eye	294 ± 12	4 of 4	1.27	Up
Thoracicoabdominal ganglion	247 ± 6	4 of 4	1.10	None
Salivary gland	1178 ± 55	4 of 4	5.07	Up
Crop	233 ± 7	4 of 4	1.00	None
Midgut	225 ± 12	4 of 4	1.00	None
Tubule	430 ± 34	4 of 4	1.90	Up
Hindgut	197 ± 5	4 of 4	0.80	None
Heart	171 ± 7	4 of 4	0.74	Down
Fat body	235 ± 22	4 of 4	1.01	None
Ovary	346 ± 14	4 of 4	1.50	Up
Testis	53 ± 1	4 of 4	0.20	Down
Male accessory glands	762 ± 28	4 of 4	3.30	Up
Virgin spermatheca	536 ± 23	4 of 4	2.31	Up
Mated spermatheca	693 ± 57	4 of 4	2.98	Up
Adult carcass	178 ± 7	4 of 4	0.80	Down
Larval CNS	203 ± 12	4 of 4	0.87	None
Larval Salivary gland	884 ± 69	4 of 4	3.81	Up
Larval midgut	374 ± 17	4 of 4	1.61	Up
Larval tubule	339 ± 6	4 of 4	1.50	Up
Larval hindgut	309 ± 14	4 of 4	1.33	Up
Larval fat body	223 ± 21	4 of 4	1.00	None
Larval trachea	183 ± 18	4 of 4	0.79	Down
Larval carcass	273 ± 15	4 of 4	1.18	None
S2 cells (growing)	265 ± 8	4 of 4	1.14	None
Whole fly	232 ± 15	4 of 4

Looking for CG4237-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720