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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4237-RA through 18771 annotations produced 1 hits



GTPase-activating protein 69C (Gap69C):

Annotation Number : CG4237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020655
Gbrowse : chr3L:12408125-12410803 (-) // 100.0 //
Probeset : 1641630_at
Accessions : protein= NP_524040;, nucleotide= NM_079316;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : 0005525 // GTP binding // non-traceable author statement /// 0008060 // ARF GTPase activator activity // inferred from s
FlyMine data for FBgn0020655.
BioGrid reports that CG4237 interacts with CG6172 .
VDRC has 3 RNAi stocks for FBgn0020655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain225 54 of 4 1.00None
Head216 24 of 4 0.90None
Eye294 124 of 4 1.27Up
Thoracicoabdominal ganglion247 64 of 4 1.10None
Salivary gland1178 554 of 4 5.07Up
Crop233 74 of 4 1.00None
Midgut225 124 of 4 1.00None
Tubule430 344 of 4 1.90Up
Hindgut197 54 of 4 0.80None
Heart171 74 of 4 0.74Down
Fat body235 224 of 4 1.01None
Ovary346 144 of 4 1.50Up
Testis53 14 of 4 0.20Down
Male accessory glands762 284 of 4 3.30Up
Virgin spermatheca536 234 of 4 2.31Up
Mated spermatheca693 574 of 4 2.98Up
Adult carcass178 74 of 4 0.80Down
Larval CNS203 124 of 4 0.87None
Larval Salivary gland884 694 of 4 3.81Up
Larval midgut374 174 of 4 1.61Up
Larval tubule339 64 of 4 1.50Up
Larval hindgut309 144 of 4 1.33Up
Larval fat body223 214 of 4 1.00None
Larval trachea183 184 of 4 0.79Down
Larval carcass273 154 of 4 1.18None
S2 cells (growing)265 84 of 4 1.14None
Whole fly232 154 of 4

Looking for CG4237-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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