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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4247-RA through 18771 annotations produced 1 hits



/// mitochondrial ribosomal protein S10 (CG34316 /// mRpS10):

Annotation Number : CG4247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038307 /// FBgn0085345
Gbrowse : chr3R:11055388-11056238 (+) // 100.0 //
Probeset : 1622898_a_at
Accessions : protein= NP_001097797; /// NP_001097798; /// NP_001097799; /// NP_001163618; /// NP_524355; /// NP_731985;, nucleotide= NM_001104327; /// NM_001104328; /// NM_001104329; /// NM_001170147; /// NM_079631; /// NM_169624;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038307 /// FBgn0085345.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 54 of 4 0.90None
Head107 64 of 4 0.40Down
Eye96 64 of 4 0.40Down
Thoracicoabdominal ganglion175 34 of 4 0.70Down
Salivary gland105 84 of 4 0.44Down
Crop85 44 of 4 0.40Down
Midgut106 44 of 4 0.40Down
Tubule102 64 of 4 0.40Down
Hindgut125 24 of 4 0.50Down
Heart95 44 of 4 0.40Down
Fat body75 74 of 4 0.31Down
Ovary339 44 of 4 1.40Up
Testis244 54 of 4 1.00None
Male accessory glands98 24 of 4 0.40Down
Virgin spermatheca39 14 of 4 0.16Down
Mated spermatheca51 24 of 4 0.22Down
Adult carcass92 34 of 4 0.40Down
Larval CNS212 134 of 4 0.89None
Larval Salivary gland146 34 of 4 0.61Down
Larval midgut83 64 of 4 0.35Down
Larval tubule27 04 of 4 0.10Down
Larval hindgut137 154 of 4 0.57Down
Larval fat body43 84 of 4 0.20Down
Larval trachea200 304 of 4 0.83None
Larval carcass121 194 of 4 0.51Down
S2 cells (growing)215 64 of 4 0.90None
Whole fly239 174 of 4

Looking for CG4247-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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