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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4254-RA through 18771 annotations produced 1 hits



cofilin (tsr):

Annotation Number : CG4254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011726
Gbrowse : chr2R:19931970-19934359 (-) // 100.0 //
Probeset : 1623463_at
Accessions : protein= NP_477034;, nucleotide= NM_057686;
Pathway : actomyosin contractile ring assembly // traceable author statement /// 0001736 // establishment of planar polarity // i
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
FlyMine data for FBgn0011726.
Homophila reports that CG4254 is a close match (7e-11) to human gene CFL2;NEM7 (NP_619579), a gene associated with Nemaline myopathy 7, 610687 (3).
BioGrid reports that CG4254 interacts with CG5178 CG5725 CG6315 CG3172 .
TRiP has 1 RNAi stocks for FBgn0011726 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1123 264 of 4 0.30Down
Head2145 474 of 4 0.70Down
Eye2112 544 of 4 0.64Down
Thoracicoabdominal ganglion1478 384 of 4 0.40Down
Salivary gland3599 1144 of 4 1.09None
Crop5400 3054 of 4 1.60Up
Midgut5227 944 of 4 1.60Up
Tubule3418 2184 of 4 1.00None
Hindgut4103 414 of 4 1.20Up
Heart3642 1164 of 4 1.10None
Fat body1977 1474 of 4 0.60Down
Ovary3258 624 of 4 1.00None
Testis1522 164 of 4 0.50Down
Male accessory glands2932 2114 of 4 0.90None
Virgin spermatheca2659 714 of 4 0.81Down
Mated spermatheca2842 1394 of 4 0.86None
Adult carcass2420 1434 of 4 0.70Down
Larval CNS2840 1474 of 4 0.86Down
Larval Salivary gland6309 2654 of 4 1.91Up
Larval midgut5587 1484 of 4 1.69Up
Larval tubule4795 694 of 4 1.50Up
Larval hindgut4301 864 of 4 1.30Up
Larval fat body4343 4174 of 4 1.30None
Larval trachea5470 1154 of 4 1.66Up
Larval carcass5110 3544 of 4 1.55Up
S2 cells (growing)4297 814 of 4 1.30Up
Whole fly3299 1524 of 4

Looking for CG4254-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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