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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4259-RA through 18771 annotations produced 1 hits



(CG4259):

Annotation Number : CG4259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031389
Gbrowse : chr2L:2128214-2129211 (-) // 100.0 //
Probeset : 1636689_at
Accessions : protein= NP_608645;, nucleotide= NM_134801;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031389.
BDGP gene expression has embryonic in situ data for CG4259: 4 pix of staining in 1 body parts.
Homophila reports that CG4259 is a close match (8e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
VDRC has 6 RNAi stocks for FBgn0031389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.30Down
Head101 ± 64 of 4 1.80Up
Eye38 ± 94 of 4 0.66None
Thoracicoabdominal ganglion10 ± 12 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.12Down
Crop8 ± 10 of 4 0.10Down
Midgut8 ± 10 of 4 0.20Down
Tubule8 ± 12 of 4 0.10Down
Hindgut20 ± 14 of 4 0.40Down
Heart564 ± 354 of 4 9.76Up
Fat body798 ± 674 of 413.81Up
Ovary3 ± 00 of 4 0.10Down
Testis23 ± 14 of 4 0.40Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca797 ± 284 of 413.79Up
Mated spermatheca1022 ± 254 of 417.69Up
Adult carcass314 ± 204 of 4 5.40Up
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland8 ± 02 of 4 0.15Down
Larval midgut27 ± 64 of 4 0.47Down
Larval tubule41 ± 84 of 4 0.70None
Larval hindgut20 ± 04 of 4 0.36Down
Larval fat body97 ± 194 of 4 1.70None
Larval trachea36 ± 94 of 4 0.64Down
Larval carcass76 ± 34 of 4 1.32Up
S2 cells (growing)1333 ± 104 of 423.08Up
Whole fly57 ± 44 of 4

Looking for CG4259-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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