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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4266-RA through 18771 annotations produced 1 hits



(CG4266):

Annotation Number : CG4266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034598
Gbrowse : chr2R:17049217-17056163 (-) // 100.0 //
Probeset : 1632281_at
Accessions : protein= NP_001097394; /// NP_611557;, nucleotide= NM_001103924; /// NM_137713;
Pathway : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0034598.
VDRC has 2 RNAi stocks for FBgn0034598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain223 104 of 4 2.00Up
Head84 24 of 4 0.70Down
Eye49 24 of 4 0.43Down
Thoracicoabdominal ganglion127 34 of 4 1.10None
Salivary gland105 124 of 4 0.93None
Crop94 34 of 4 0.80Down
Midgut73 44 of 4 0.70Down
Tubule78 34 of 4 0.70Down
Hindgut99 54 of 4 0.90None
Heart63 24 of 4 0.56Down
Fat body127 94 of 4 1.13None
Ovary298 54 of 4 2.60Up
Testis31 44 of 4 0.30Down
Male accessory glands90 24 of 4 0.80Down
Virgin spermatheca72 84 of 4 0.64Down
Mated spermatheca59 64 of 4 0.53Down
Adult carcass82 34 of 4 0.70Down
Larval CNS309 734 of 4 2.74Up
Larval Salivary gland167 234 of 4 1.48None
Larval midgut112 54 of 4 1.00None
Larval tubule100 44 of 4 0.90None
Larval hindgut162 44 of 4 1.44Up
Larval fat body78 54 of 4 0.70Down
Larval trachea94 74 of 4 0.84Down
Larval carcass134 84 of 4 1.19None
S2 cells (growing)174 64 of 4 1.54Up
Whole fly113 44 of 4

Looking for CG4266-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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