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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4278-RA through 18771 annotations produced 1 hits



(CG4278):

Annotation Number : CG4278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014092
Gbrowse : chr2L:16327070-16328131 (+) // 100.0 //
Probeset : 1639932_at
Accessions : protein= NP_609790;, nucleotide= NM_135946;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0014092.
BDGP gene expression has embryonic in situ data for CG4278: 10 pix of staining in 2 body parts.
BioGrid reports that CG4278 interacts with CG4278 .
VDRC has 2 RNAi stocks for FBgn0014092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 34 of 4 0.70Down
Head187 44 of 4 0.70Down
Eye188 54 of 4 0.74Down
Thoracicoabdominal ganglion203 84 of 4 0.80Down
Salivary gland334 84 of 4 1.32Up
Crop242 94 of 4 1.00None
Midgut265 114 of 4 1.00None
Tubule382 54 of 4 1.50Up
Hindgut242 34 of 4 1.00None
Heart181 64 of 4 0.71Down
Fat body210 84 of 4 0.83Down
Ovary372 64 of 4 1.50Up
Testis109 44 of 4 0.40Down
Male accessory glands359 114 of 4 1.40Up
Virgin spermatheca282 74 of 4 1.11Up
Mated spermatheca335 124 of 4 1.32Up
Adult carcass141 74 of 4 0.60Down
Larval CNS392 144 of 4 1.55Up
Larval Salivary gland377 154 of 4 1.49Up
Larval midgut201 74 of 4 0.79Down
Larval tubule232 64 of 4 0.90None
Larval hindgut262 14 of 4 1.03None
Larval fat body162 104 of 4 0.60Down
Larval trachea433 444 of 4 1.71Up
Larval carcass229 114 of 4 0.90None
S2 cells (growing)274 34 of 4 1.08None
Whole fly254 74 of 4

Looking for CG4278-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime