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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4285-RA through 18771 annotations produced 1 hits



CG34128 (CG42404):

Annotation Number : CG4285
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259823
Gbrowse : chr3R:11077822-11082789 (+) // 100.0 //
Probeset : 1624235_at
Accessions : protein= NP_650437;, nucleotide= NM_142180;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259823.
BioGrid reports that CG4285 interacts with CG7552 CG7954 .
VDRC has 3 RNAi stocks for FBgn0259823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain490 94 of 430.10Up
Head93 104 of 4 5.70Up
Eye110 44 of 4 6.80Up
Thoracicoabdominal ganglion450 154 of 427.70Up
Salivary gland13 31 of 4 0.81None
Crop8 10 of 4 0.50Down
Midgut5 00 of 4 0.30Down
Tubule16 22 of 4 1.00None
Hindgut3 00 of 4 0.20Down
Heart6 02 of 4 0.40Down
Fat body14 23 of 4 0.86None
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands5 10 of 4 0.30Down
Virgin spermatheca18 04 of 4 1.16Up
Mated spermatheca20 34 of 4 1.24None
Adult carcass6 20 of 4 0.40Down
Larval CNS399 264 of 424.57Up
Larval Salivary gland8 22 of 4 0.51None
Larval midgut3 10 of 4 0.20Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 00 of 4 0.18Down
Larval fat body6 11 of 4 0.40Down
Larval trachea2 21 of 4 0.16Down
Larval carcass4 00 of 4 0.29Down
S2 cells (growing)3 00 of 4 0.23Down
Whole fly16 04 of 4

Looking for CG4285-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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