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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4286-RA through 18771 annotations produced 1 hits


(CG4286):

Annotation Number : CG4286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034601
Gbrowse : chr2R:17065250-17066141 (-) // 100.0 //
Probeset : 1633858_at
Accessions : protein= NP_611560;, nucleotide= NM_137716;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034601.
BDGP gene expression has embryonic in situ data for CG4286: 2 pix of staining in 1 body parts.
BioGrid reports that CG4286 interacts with CG5709 CG5792 CG6779 CG8206 CG9291 .
VDRC has 2 RNAi stocks for FBgn0034601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.06Down
Crop1 ± 00 of 4 0.00Down
Midgut5 ± 20 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.01Down
Fat body4 ± 20 of 4 0.05Down
Ovary3 ± 10 of 4 0.00Down
Testis1046 ± 304 of 410.90Up
Male accessory glands7 ± 30 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca6 ± 10 of 4 0.06Down
Adult carcass8 ± 60 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.03Down
Larval Salivary gland8 ± 30 of 4 0.09Down
Larval midgut11 ± 10 of 4 0.12Down
Larval tubule4 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body75 ± 323 of 4 0.80None
Larval trachea6 ± 51 of 4 0.07Down
Larval carcass6 ± 20 of 4 0.06Down
S2 cells (growing)3 ± 10 of 4 0.04Down
Whole fly95 ± 74 of 4

Looking for CG4286-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime