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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4288-RB through 18771 annotations produced 1 hits



(CG4288):

Annotation Number : CG4288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038799
Gbrowse : chr3R:16333111-16338169 (-) // 100.0 //
Probeset : 1633405_s_at
Accessions : protein= NP_650889; /// NP_732515;, nucleotide= NM_142632; /// NM_169898;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0038799.
BDGP gene expression has embryonic in situ data for CG4288: 2 pix of staining in 1 body parts.
Homophila reports that CG4288 is a close match (2e-96) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
BioGrid reports that CG4288 interacts with CG6866 .
TRiP has 1 RNAi stocks for FBgn0038799 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038799 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain375 164 of 411.50Up
Head204 124 of 4 6.30Up
Eye9 31 of 4 0.28Down
Thoracicoabdominal ganglion326 174 of 410.00Up
Salivary gland99 64 of 4 3.06Up
Crop3 10 of 4 0.10Down
Midgut6 30 of 4 0.20Down
Tubule253 124 of 4 7.80Up
Hindgut144 144 of 4 4.40Up
Heart3 10 of 4 0.10Down
Fat body1 00 of 4 0.05Down
Ovary0 00 of 4 0.00Down
Testis312 314 of 4 9.60Up
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca49 74 of 4 1.50None
Mated spermatheca85 114 of 4 2.61Up
Adult carcass8 50 of 4 0.30Down
Larval CNS629 1494 of 419.31Up
Larval Salivary gland97 144 of 4 2.99Up
Larval midgut8 10 of 4 0.26Down
Larval tubule335 584 of 410.30Up
Larval hindgut30 14 of 4 0.94None
Larval fat body3 20 of 4 0.10Down
Larval trachea15 04 of 4 0.46Down
Larval carcass89 44 of 4 2.76Up
S2 cells (growing)0 00 of 4 0.03Down
Whole fly32 24 of 4

Looking for CG4288-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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