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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4307-RA through 18771 annotations produced 1 hits



Oligomycin sensitivity-conferring protein (Oscp):

Annotation Number : CG4307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016691
Gbrowse : chr3R:11091297-11092412 (+) // 100.0 //
Probeset : 1631750_a_at
Accessions : protein= NP_524358; /// NP_731995;, nucleotide= NM_079634; /// NM_169631;
Pathway : "0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : central stalk // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred from direct
FlyMine data for FBgn0016691.
BDGP gene expression has embryonic in situ data for Oscp: 14 pix of staining in 17 body parts.
VDRC has 3 RNAi stocks for FBgn0016691 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2043 614 of 4 0.80Down
Head2885 614 of 4 1.10Up
Eye3295 754 of 4 1.29Up
Thoracicoabdominal ganglion2716 694 of 4 1.10None
Salivary gland4063 994 of 4 1.59Up
Crop2808 1604 of 4 1.10None
Midgut2909 604 of 4 1.10Up
Tubule3427 374 of 4 1.30Up
Hindgut3772 1044 of 4 1.50Up
Heart4173 2484 of 4 1.63Up
Fat body3601 3714 of 4 1.41Up
Ovary1597 194 of 4 0.60Down
Testis491 84 of 4 0.20Down
Male accessory glands1462 664 of 4 0.60Down
Virgin spermatheca3181 874 of 4 1.24Up
Mated spermatheca2952 1074 of 4 1.15Up
Adult carcass5177 2894 of 4 2.00Up
Larval CNS1580 1004 of 4 0.62Down
Larval Salivary gland2782 1264 of 4 1.09None
Larval midgut3199 604 of 4 1.25Up
Larval tubule2882 2064 of 4 1.10None
Larval hindgut3282 334 of 4 1.28Up
Larval fat body1586 1794 of 4 0.60Down
Larval trachea2432 1094 of 4 0.95None
Larval carcass3230 2054 of 4 1.26Up
S2 cells (growing)1233 144 of 4 0.48Down
Whole fly2556 554 of 4

Looking for CG4307-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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