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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4314-RA through 18771 annotations produced 1 hits


scarlet (st):

Annotation Number : CG4314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003515
Gbrowse : chr3L:16490753-16493567 (+) // 100.0 //
Probeset : 1641146_at
Accessions : protein= NP_524108;, nucleotide= NM_079384;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005395 // eye pigment precursor transporter a
FlyMine data for FBgn0003515.
BDGP gene expression has embryonic in situ data for st: 11 pix of staining in 4 body parts.
Homophila reports that CG4314 is a close match (7e-11) to human gene ABCB4;MDR3;PGY3 (NP_000434), a gene associated with Cholestasis, familial intrahepatic, of pregnancy, 147480 (3);Cholestasis, progressive familial intrahepatic 3, 602347 (3);Gallbladder disease 1, 600803 (3).
BioGrid reports that CG4314 interacts with CG8295 .
VDRC has 3 RNAi stocks for FBgn0003515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head80 ± 24 of 4 1.80Up
Eye281 ± 174 of 4 6.26Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.22Down
Crop5 ± 10 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule4177 ± 1134 of 492.90Up
Hindgut8 ± 10 of 4 0.20Down
Heart2 ± 00 of 4 0.06Down
Fat body4 ± 40 of 4 0.11Down
Ovary2 ± 10 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca10 ± 31 of 4 0.24Down
Mated spermatheca3 ± 10 of 4 0.08Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut2 ± 00 of 4 0.05Down
Larval tubule219 ± 214 of 4 4.90Up
Larval hindgut6 ± 10 of 4 0.14Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea5 ± 71 of 4 0.13Down
Larval carcass2 ± 10 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly45 ± 54 of 4

Looking for CG4314-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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