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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4317-RA through 18771 annotations produced 1 hits



Multiple inositol polyphosphate phosphatase 2 (Mipp2):

Annotation Number : CG4317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026060
Gbrowse : chrX:5976739-5985421 (-) // 100.0 //
Probeset : 1630756_at
Accessions : protein= NP_511055;, nucleotide= NM_078500;
Interpro : 0003993 // acid phosphatase activity // inferred from electronic annotation /// 0004437 // inositol or phosphatidylinosi
FlyMine data for FBgn0026060.
BDGP gene expression has embryonic in situ data for Mipp2: 4 pix of staining in 1 body parts.
Homophila reports that CG4317 is a close match (2e-31) to human gene MINPP1;HIPER1 (NP_004888), a gene associated with Thyroid carcinoma, follicular, 188470 (3).
VDRC has 3 RNAi stocks for FBgn0026060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain321 ± 134 of 4 1.10None
Head186 ± 64 of 4 0.60Down
Eye213 ± 54 of 4 0.72Down
Thoracicoabdominal ganglion354 ± 84 of 4 1.20Up
Salivary gland615 ± 564 of 4 2.06Up
Crop323 ± 224 of 4 1.10None
Midgut212 ± 94 of 4 0.70Down
Tubule414 ± 274 of 4 1.40Up
Hindgut332 ± 114 of 4 1.10None
Heart300 ± 144 of 4 1.01None
Fat body419 ± 594 of 4 1.40Up
Ovary988 ± 184 of 4 3.30Up
Testis65 ± 34 of 4 0.20Down
Male accessory glands283 ± 74 of 4 0.90None
Virgin spermatheca279 ± 44 of 4 0.93None
Mated spermatheca270 ± 104 of 4 0.90None
Adult carcass261 ± 114 of 4 0.90None
Larval CNS370 ± 294 of 4 1.24Up
Larval Salivary gland333 ± 394 of 4 1.12None
Larval midgut219 ± 104 of 4 0.74Down
Larval tubule321 ± 214 of 4 1.10None
Larval hindgut332 ± 84 of 4 1.11None
Larval fat body208 ± 184 of 4 0.70Down
Larval trachea223 ± 104 of 4 0.75Down
Larval carcass280 ± 34 of 4 0.94None
S2 cells (growing)260 ± 74 of 4 0.87Down
Whole fly298 ± 124 of 4

Looking for CG4317-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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