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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4318-RA through 18771 annotations produced 1 hits



(CG4318):

Annotation Number : CG4318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030455
Gbrowse : chrX:13048182-13048881 (-) // 100.0 //
Probeset : 1624758_at
Accessions : protein= NP_572860;, nucleotide= NM_132632;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0030455.
Homophila reports that CG4318 is a close match (7e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
VDRC has 3 RNAi stocks for FBgn0030455 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.60Down
Head4 10 of 4 0.50None
Eye4 11 of 4 0.51None
Thoracicoabdominal ganglion7 01 of 4 1.00None
Salivary gland10 30 of 4 1.30None
Crop4 10 of 4 0.50Down
Midgut6 00 of 4 0.80None
Tubule3 00 of 4 0.40Down
Hindgut2 00 of 4 0.30Down
Heart2 00 of 4 0.26Down
Fat body1 00 of 4 0.13Down
Ovary5 10 of 4 0.70None
Testis70 14 of 4 8.80Up
Male accessory glands2 10 of 4 0.30Down
Virgin spermatheca3 10 of 4 0.48None
Mated spermatheca5 20 of 4 0.65None
Adult carcass8 30 of 4 1.10None
Larval CNS3 21 of 4 0.41Down
Larval Salivary gland3 10 of 4 0.49Down
Larval midgut4 00 of 4 0.59Down
Larval tubule4 10 of 4 0.50None
Larval hindgut1 00 of 4 0.24Down
Larval fat body33 94 of 4 4.10None
Larval trachea4 01 of 4 0.55Down
Larval carcass3 10 of 4 0.46None
S2 cells (growing)3 00 of 4 0.41Down
Whole fly8 03 of 4

Looking for CG4318-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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