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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4322-RA through 18771 annotations produced 1 hits



moody (moody):

Annotation Number : CG4322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025631
Gbrowse : chrX:1938323-1942427 (-) // 100.0 //
Probeset : 1633112_at
Accessions : protein= NP_569970;, nucleotide= NM_130614;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0025631.
BDGP gene expression has embryonic in situ data for EG:22E5.11: 31 pix of staining in 14 body parts.
Homophila reports that CG4322 is a close match (7e-11) to human gene (NP_000721), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0025631 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025631 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain457 ± 144 of 4 3.30Up
Head481 ± 94 of 4 3.40Up
Eye572 ± 134 of 4 4.08Up
Thoracicoabdominal ganglion515 ± 94 of 4 3.70Up
Salivary gland379 ± 34 of 4 2.70Up
Crop239 ± 74 of 4 1.70Up
Midgut295 ± 94 of 4 2.10Up
Tubule399 ± 524 of 4 2.80Up
Hindgut213 ± 44 of 4 1.50Up
Heart352 ± 184 of 4 2.51Up
Fat body440 ± 274 of 4 3.14Up
Ovary28 ± 24 of 4 0.20Down
Testis111 ± 74 of 4 0.80Down
Male accessory glands323 ± 84 of 4 2.30Up
Virgin spermatheca943 ± 644 of 4 6.72Up
Mated spermatheca726 ± 234 of 4 5.18Up
Adult carcass317 ± 144 of 4 2.30Up
Larval CNS453 ± 424 of 4 3.23Up
Larval Salivary gland125 ± 64 of 4 0.89None
Larval midgut220 ± 134 of 4 1.57Up
Larval tubule92 ± 34 of 4 0.70Down
Larval hindgut222 ± 184 of 4 1.58Up
Larval fat body136 ± 104 of 4 1.00None
Larval trachea299 ± 284 of 4 2.13Up
Larval carcass152 ± 134 of 4 1.08None
S2 cells (growing)545 ± 154 of 4 3.88Up
Whole fly140 ± 84 of 4

Looking for CG4322-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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