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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4328-RA through 18771 annotations produced 1 hits



(CG4328):

Annotation Number : CG4328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036274
Gbrowse : chr3L:12284135-12286062 (-) // 100.0 //
Probeset : 1633414_at
Accessions : protein= NP_648567;, nucleotide= NM_140310;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from electronic ann
FlyMine data for FBgn0036274.
Homophila reports that CG4328 is a close match (1e-34) to human gene LHX3 (NP_835258), a gene associated with Pituitary hormone deficiency, combined, with rigid cervical spine, 262600 (3).
BioGrid reports that CG4328 interacts with CG4367 CG4767 CG6033 CG6203 CG6240 CG6570 CG7238 CG7787 CG7856 .
TRiP has 1 RNAi stocks for FBgn0036274 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036274 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 ± 34 of 438.00Up
Head16 ± 00 of 4 6.00Up
Eye4 ± 10 of 4 1.82None
Thoracicoabdominal ganglion127 ± 14 of 447.70Up
Salivary gland6 ± 40 of 4 2.51None
Crop5 ± 10 of 4 1.90None
Midgut1 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 1.00None
Hindgut2 ± 00 of 4 0.90None
Heart1 ± 00 of 4 0.37None
Fat body6 ± 30 of 4 2.23None
Ovary0 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.80None
Male accessory glands4 ± 10 of 4 1.60None
Virgin spermatheca2 ± 10 of 4 0.86None
Mated spermatheca1 ± 00 of 4 0.52None
Adult carcass6 ± 30 of 4 2.50None
Larval CNS76 ± 94 of 428.48Up
Larval Salivary gland1 ± 00 of 4 0.64None
Larval midgut1 ± 00 of 4 0.52None
Larval tubule2 ± 10 of 4 0.90None
Larval hindgut4 ± 10 of 4 1.66None
Larval fat body2 ± 10 of 4 1.00None
Larval trachea0 ± 00 of 4 0.21None
Larval carcass3 ± 20 of 4 1.43None
S2 cells (growing)1 ± 00 of 4 0.54None
Whole fly2 ± 00 of 4

Looking for CG4328-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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