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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4330-RA through 18771 annotations produced 1 hits



(CG4330):

Annotation Number : CG4330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030452
Gbrowse : chrX:13025570-13028598 (+) // 100.0 //
Probeset : 1636693_at
Accessions : protein= NP_572857;, nucleotide= NM_132629;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0030452.
Homophila reports that CG4330 is a close match (2e-80) to human gene DFNA25;SLC17A8;VGLUT3 (NP_647480), a gene associated with Deafness, autosomal dominant 25, 605583 (3).
BioGrid reports that CG4330 interacts with CG8567 .
TRiP has 2 RNAi stocks for FBgn0030452 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030452 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 ± 54 of 4 2.00Up
Head108 ± 34 of 4 1.40Up
Eye82 ± 54 of 4 1.03None
Thoracicoabdominal ganglion175 ± 64 of 4 2.20Up
Salivary gland395 ± 74 of 4 4.93Up
Crop58 ± 04 of 4 0.70Down
Midgut183 ± 44 of 4 2.30Up
Tubule291 ± 334 of 4 3.60Up
Hindgut101 ± 24 of 4 1.30Up
Heart801 ± 224 of 4 9.99Up
Fat body68 ± 44 of 4 0.85None
Ovary33 ± 34 of 4 0.40Down
Testis22 ± 34 of 4 0.30Down
Male accessory glands2818 ± 1114 of 435.10Up
Virgin spermatheca139 ± 64 of 4 1.74Up
Mated spermatheca136 ± 54 of 4 1.70Up
Adult carcass131 ± 94 of 4 1.60Up
Larval CNS53 ± 54 of 4 0.67Down
Larval Salivary gland41 ± 14 of 4 0.52Down
Larval midgut356 ± 144 of 4 4.44Up
Larval tubule638 ± 524 of 4 8.00Up
Larval hindgut103 ± 34 of 4 1.28Up
Larval fat body11 ± 20 of 4 0.10Down
Larval trachea62 ± 44 of 4 0.77Down
Larval carcass79 ± 104 of 4 0.99None
S2 cells (growing)261 ± 44 of 4 3.25Up
Whole fly80 ± 54 of 4

Looking for CG4330-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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