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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG4345-RA through 18771 annotations produced 1 hits

grim (grim):

Annotation Number : CG4345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015946
Gbrowse : chr3L:18295818-18297514 (-) // 100.0 //
Probeset : 1633724_at
Accessions : protein= NP_524137;, nucleotide= NM_079413;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005739 // mitochondrion // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0015946.
BDGP gene expression has embryonic in situ data for grim: 37 pix of staining in 11 body parts.
BioGrid reports that CG4345 interacts with CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG5123 CG5370 CG4319 CG8293 CG8293 CG6829 CG6829 CG6829 CG6303 CG6303 CG8238 CG8091 CG8091 CG15437 CG15437 CG15437 CG15437 CG13701 Dmel CR33010 .
VDRC has 3 RNAi stocks for FBgn0015946 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 14 of 4 8.00Up
Head4 01 of 4 2.50None
Eye1 00 of 4 0.64None
Thoracicoabdominal ganglion9 12 of 4 5.70Up
Salivary gland5 10 of 4 3.56Up
Crop5 02 of 4 3.20Up
Midgut1 00 of 4 0.70None
Tubule1 00 of 4 1.20Up
Hindgut1 00 of 4 1.00None
Heart0 00 of 4 0.35None
Fat body5 42 of 4 3.48None
Ovary1 00 of 4 0.80None
Testis0 00 of 4 0.20None
Male accessory glands0 00 of 4 0.50None
Virgin spermatheca3 01 of 4 2.26None
Mated spermatheca4 11 of 4 2.73None
Adult carcass6 10 of 4 3.80Up
Larval CNS24 124 of 414.67Up
Larval Salivary gland1 00 of 4 0.88None
Larval midgut1 00 of 4 0.76None
Larval tubule1 00 of 4 0.70None
Larval hindgut0 00 of 4 0.36None
Larval fat body1 00 of 4 1.10None
Larval trachea1 10 of 4 0.79None
Larval carcass2 11 of 4 1.24None
S2 cells (growing)0 00 of 4 0.59None
Whole fly1 00 of 4

Looking for CG4345-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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