Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4353-RC through 18771 annotations produced 1 hits



chrX:12976840-12984453 (-) // 100.0 // (hemipterous):

Annotation Number : CG4353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623804_a_at
Accessions : protein= , nucleotide= NP_511142; /// NP_727661; /// NP_727662;
Pathway : "0000165 // MAPKKK cascade // non-traceable author statement /// 0001736 // establishment of planar polarity // non-trac
Interpro : spreading of leading edge cells // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred fro
FlyMine data for full length.
Homophila reports that CG4353 is a close match (8e-11) to human gene HHF5;INSR (NP_000199), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
BioGrid reports that CG4353 interacts with CG8291 CG11579 CG11579 CG3578 CG9553 CG9553 CG9885 CG18361 CG18361 CG18361 CG2275 CG31349 CG14026 CG14026 CG4889 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG7873 CG2248 CG2248 CG2849 CG18492 CG18492 CG12919 CG16973 CG16973 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG1200 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 44 of 4 4.10Up
Head7 ± 22 of 4 0.90None
Eye7 ± 23 of 4 0.87None
Thoracicoabdominal ganglion15 ± 24 of 4 1.90None
Salivary gland8 ± 31 of 4 0.97None
Crop7 ± 22 of 4 0.80None
Midgut8 ± 21 of 4 1.00None
Tubule23 ± 33 of 4 2.70Up
Hindgut12 ± 14 of 4 1.40None
Heart10 ± 03 of 4 1.23None
Fat body12 ± 24 of 4 1.50None
Ovary16 ± 14 of 4 1.90Up
Testis0 ± 00 of 4 0.10Down
Male accessory glands11 ± 10 of 4 1.40None
Virgin spermatheca16 ± 23 of 4 1.91Up
Mated spermatheca22 ± 44 of 4 2.58None
Adult carcass9 ± 01 of 4 1.10None
Larval CNS12 ± 44 of 4 1.46None
Larval Salivary gland14 ± 14 of 4 1.68None
Larval midgut7 ± 20 of 4 0.92None
Larval tubule10 ± 23 of 4 1.20None
Larval hindgut9 ± 02 of 4 1.10None
Larval fat body8 ± 11 of 4 1.00None
Larval trachea12 ± 43 of 4 1.51None
Larval carcass2 ± 00 of 4 0.33None
S2 cells (growing)15 ± 24 of 4 1.85None
Whole fly8 ± 23 of 4

Looking for CG4353-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime