FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4354-RA through 18771 annotations produced 1 hits

chr2R:20219044-20221829 (-) // 100.0 // (CCAAT/enhancer binding protein):

Annotation Number : CG4354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1641677_at
Accessions : protein= , nucleotide= NP_523843;
Pathway : "0001708 // cell fate specification // traceable author statement /// 0006350 // transcription // inferred from electron
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG4354 interacts with CG4032 CG4466 CG9375 CG32134 CG32134 CG4260 CG4257 CG5486 CG5695 CG10379 CG5408 CG9397 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	1 of 4	0.20	Down
Head	12 ± 1	4 of 4	0.40	None
Eye	7 ± 1	3 of 4	0.26	Down
Thoracicoabdominal ganglion	7 ± 1	2 of 4	0.30	Down
Salivary gland	21 ± 4	3 of 4	0.75	None
Crop	11 ± 2	2 of 4	0.40	None
Midgut	18 ± 2	4 of 4	0.60	None
Tubule	10 ± 0	2 of 4	0.40	Down
Hindgut	9 ± 3	3 of 4	0.30	Down
Heart	4 ± 0	0 of 4	0.16	Down
Fat body	18 ± 2	4 of 4	0.66	None
Ovary	9 ± 1	3 of 4	0.30	Down
Testis	4 ± 1	1 of 4	0.20	Down
Male accessory glands	11 ± 2	2 of 4	0.40	None
Virgin spermatheca	12 ± 1	4 of 4	0.43	None
Mated spermatheca	14 ± 1	4 of 4	0.52	None
Adult carcass	41 ± 4	4 of 4	1.50	None
Larval CNS	8 ± 1	4 of 4	0.30	Down
Larval Salivary gland	8 ± 2	2 of 4	0.30	Down
Larval midgut	106 ± 66	4 of 4	3.75	None
Larval tubule	884 ± 60	4 of 4	31.10	Up
Larval hindgut	62 ± 13	4 of 4	2.20	None
Larval fat body	11 ± 1	2 of 4	0.40	None
Larval trachea	3 ± 1	2 of 4	0.12	Down
Larval carcass	8 ± 0	2 of 4	0.31	Down
S2 cells (growing)	5 ± 0	1 of 4	0.18	Down
Whole fly	28 ± 5	4 of 4

Looking for CG4354-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720