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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4360-RA through 18771 annotations produced 1 hits



(CG4360):

Annotation Number : CG4360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038787
Gbrowse : chr3R:16150801-16153732 (-) // 100.0 //
Probeset : 1630396_at
Accessions : protein= NP_001097844; /// NP_650879;, nucleotide= NM_001104374; /// NM_142622;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038787.
Homophila reports that CG4360 is a close match (5e-11) to human gene WT1 (NP_077744), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG4360 interacts with CG5792 .
VDRC has 3 RNAi stocks for FBgn0038787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 84 of 4 1.20None
Head89 44 of 4 0.60Down
Eye97 64 of 4 0.67Down
Thoracicoabdominal ganglion136 94 of 4 0.90None
Salivary gland199 304 of 4 1.38None
Crop159 24 of 4 1.10None
Midgut76 34 of 4 0.50Down
Tubule62 44 of 4 0.40Down
Hindgut96 54 of 4 0.70Down
Heart139 64 of 4 0.96None
Fat body203 314 of 4 1.41Up
Ovary383 64 of 4 2.70Up
Testis46 24 of 4 0.30Down
Male accessory glands509 294 of 4 3.50Up
Virgin spermatheca69 34 of 4 0.48Down
Mated spermatheca103 44 of 4 0.72Down
Adult carcass115 64 of 4 0.80Down
Larval CNS268 284 of 4 1.86Up
Larval Salivary gland356 114 of 4 2.47Up
Larval midgut94 54 of 4 0.65Down
Larval tubule167 64 of 4 1.20Up
Larval hindgut147 124 of 4 1.02None
Larval fat body133 64 of 4 0.90None
Larval trachea169 144 of 4 1.18Up
Larval carcass176 184 of 4 1.22None
S2 cells (growing)419 94 of 4 2.90Up
Whole fly144 54 of 4

Looking for CG4360-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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