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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4373-RA through 18771 annotations produced 1 hits



Cyp6d2 (Cyp6d2):

Annotation Number : CG4373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034756
Gbrowse : chr2R:18540077-18542032 (-) // 100.0 //
Probeset : 1635593_at
Accessions : protein= NP_611698;, nucleotide= NM_137854;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0034756.
Homophila reports that CG4373 is a close match (4e-11) to human gene CYP11B1;FHI;P450C11 (NP_000488), a gene associated with Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency, 202010 (3);Aldosteronism, glucocorticoid-remediable, 103900 (3).
VDRC has 1 RNAi stocks for FBgn0034756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 01 of 4 0.30Down
Head35 34 of 4 1.50Up
Eye15 53 of 4 0.64None
Thoracicoabdominal ganglion6 21 of 4 0.30Down
Salivary gland179 64 of 4 7.29Up
Crop125 54 of 4 5.10Up
Midgut67 24 of 4 2.70Up
Tubule87 174 of 4 3.60Up
Hindgut58 44 of 4 2.40Up
Heart92 164 of 4 3.75Up
Fat body85 224 of 4 3.46Up
Ovary18 34 of 4 0.80None
Testis14 23 of 4 0.60Down
Male accessory glands58 34 of 4 2.40Up
Virgin spermatheca127 104 of 4 5.16Up
Mated spermatheca117 74 of 4 4.77Up
Adult carcass50 24 of 4 2.10Up
Larval CNS9 34 of 4 0.37Down
Larval Salivary gland254 244 of 410.34Up
Larval midgut22 34 of 4 0.91None
Larval tubule458 414 of 418.70Up
Larval hindgut68 194 of 4 2.79None
Larval fat body1185 1754 of 448.20Up
Larval trachea123 184 of 4 5.01Up
Larval carcass27 54 of 4 1.13None
S2 cells (growing)22 24 of 4 0.90None
Whole fly24 14 of 4

Looking for CG4373-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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