FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4379-RB through 18771 annotations produced 2 hits

protein kinase A (Pka-C1):

Annotation Number : CG4379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000273
Gbrowse : chr2L:9684660-9699293 (-) // 99.82 //
Probeset : 1631055_at
Accessions : protein= NP_476977; /// NP_723479; /// NP_995672;, nucleotide= NM_057629; /// NM_164866; /// NM_205950;
Pathway : imaginal disc // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // inferred fro
Interpro : sleep // inferred from mutant phenotype /// 0045475 // locomotor rhythm // non-traceable author statement /// 0045879 /
FlyMine data for FBgn0000273.
BDGP gene expression has embryonic in situ data for Pka-C1: 8 pix of staining in 1 body parts.
Homophila reports that CG4379 is a close match (1e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
BioGrid reports that CG4379 interacts with CG4832 CG3263 CG6054 CG6054 CG2125 CG11387 CG9885 CG9885 CG4637 CG4637 CG17964 CG2621 CG2621 CG11561 CG4889 .
TRiP has 3 RNAi stocks for FBgn0000273 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000273 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	419 ± 27	4 of 4	3.40	Up
Head	127 ± 19	4 of 4	1.00	None
Eye	268 ± 22	4 of 4	2.19	Up
Thoracicoabdominal ganglion	279 ± 25	4 of 4	2.30	Up
Salivary gland	190 ± 39	4 of 4	1.56	None
Crop	119 ± 4	4 of 4	1.00	None
Midgut	111 ± 7	4 of 4	0.90	None
Tubule	57 ± 1	4 of 4	0.50	Down
Hindgut	199 ± 7	4 of 4	1.60	Up
Heart	193 ± 24	4 of 4	1.57	None
Fat body	66 ± 10	4 of 4	0.54	Down
Ovary	155 ± 2	4 of 4	1.30	Up
Testis	20 ± 0	4 of 4	0.20	Down
Male accessory glands	86 ± 7	4 of 4	0.70	Down
Virgin spermatheca	29 ± 2	4 of 4	0.24	Down
Mated spermatheca	31 ± 4	4 of 4	0.25	Down
Adult carcass	97 ± 10	4 of 4	0.80	None
Larval CNS	268 ± 22	4 of 4	2.19	Up
Larval Salivary gland	276 ± 20	4 of 4	2.25	Up
Larval midgut	98 ± 6	4 of 4	0.80	None
Larval tubule	190 ± 13	4 of 4	1.50	Up
Larval hindgut	179 ± 12	4 of 4	1.46	Up
Larval fat body	40 ± 4	4 of 4	0.30	Down
Larval trachea	449 ± 22	4 of 4	3.67	Up
Larval carcass	369 ± 22	4 of 4	3.01	Up
S2 cells (growing)	86 ± 2	4 of 4	0.71	Down
Whole fly	122 ± 7	4 of 4

protein kinase A (Pka-C1):

Annotation Number : CG4379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000273
Gbrowse : chr2L:9696282-9699293 (-) // 100.0 //
Probeset : 1632409_a_at
Accessions : protein= NP_476977; /// NP_723479; /// NP_995672;, nucleotide= NM_057629; /// NM_164866; /// NM_205950;
Pathway : imaginal disc // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // inferred fro
Interpro : sleep // inferred from mutant phenotype /// 0045475 // locomotor rhythm // non-traceable author statement /// 0045879 /
FlyMine data for FBgn0000273.
BDGP gene expression has embryonic in situ data for Pka-C1: 8 pix of staining in 1 body parts.
Homophila reports that CG4379 is a close match (1e-11) to human gene MAPK10;PRKM10;JNK3 (NP_620447), a gene associated with Epileptic encephalopathy, Lennox-Gastaut type, 606369 (3).
BioGrid reports that CG4379 interacts with CG4832 CG3263 CG6054 CG6054 CG2125 CG11387 CG9885 CG9885 CG4637 CG4637 CG17964 CG2621 CG2621 CG11561 CG4889 .
TRiP has 3 RNAi stocks for FBgn0000273 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000273 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	124 ± 4	4 of 4	2.70	Up
Head	41 ± 8	4 of 4	0.90	None
Eye	60 ± 5	4 of 4	1.32	None
Thoracicoabdominal ganglion	82 ± 14	4 of 4	1.80	None
Salivary gland	107 ± 28	4 of 4	2.36	None
Crop	47 ± 3	4 of 4	1.00	None
Midgut	37 ± 3	4 of 4	0.80	None
Tubule	27 ± 1	3 of 4	0.60	Down
Hindgut	68 ± 4	4 of 4	1.50	Up
Heart	40 ± 3	4 of 4	0.89	None
Fat body	18 ± 5	0 of 4	0.41	Down
Ovary	53 ± 0	4 of 4	1.20	None
Testis	14 ± 2	4 of 4	0.30	Down
Male accessory glands	36 ± 3	4 of 4	0.80	None
Virgin spermatheca	6 ± 1	0 of 4	0.14	Down
Mated spermatheca	9 ± 1	0 of 4	0.20	Down
Adult carcass	45 ± 10	3 of 4	1.00	None
Larval CNS	62 ± 10	4 of 4	1.38	Up
Larval Salivary gland	105 ± 22	4 of 4	2.32	None
Larval midgut	36 ± 1	4 of 4	0.81	None
Larval tubule	84 ± 7	4 of 4	1.90	Up
Larval hindgut	49 ± 5	4 of 4	1.10	None
Larval fat body	25 ± 3	2 of 4	0.60	Down
Larval trachea	91 ± 11	4 of 4	2.00	Up
Larval carcass	84 ± 9	4 of 4	1.85	Up
S2 cells (growing)	50 ± 3	4 of 4	1.11	None
Whole fly	45 ± 4	4 of 4

Looking for CG4379-RB. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720