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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4385-RB through 18771 annotations produced 1 hits



star (S):

Annotation Number : CG4385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003310
Gbrowse : chr2L:1050876-1077811 (-) // 100.0 //
Probeset : 1638189_s_at
Accessions : protein= NP_523450; /// NP_722674;, nucleotide= NM_078726; /// NM_164403;
Pathway : open tracheal system // traceable author statement /// 0048149 // behavioral response to ethanol // inferred from mutan
Interpro : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from d
FlyMine data for FBgn0003310.
BDGP gene expression has embryonic in situ data for S: 23 pix of staining in 21 body parts.
BioGrid reports that CG4385 interacts with CG8310 CG3166 CG3954 CG17610 CG17610 CG17610 CG17610 CG17610 CG17610 CG5460 CG3340 CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG6775 CG6775 CG4336 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG3936 CG3936 CG7873 CG4531 CG4531 CG4531 CG4531 CG4531 CG4531 CG4426 CG4426 CG4426 CG4426 CG4426 CG4426 CG5461 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1004 CG1697 CG4319 CG18085 CG18085 CG18085 CG18085 CG9949 CG10334 CG10334 CG10334 CG10334 CG10334 CG10334 CG10334 CG10334 CG10334 CG10334 CG1921 CG33166 CG33166 CG33166 CG33166 CG6222 CG6222 .
TRiP has 1 RNAi stocks for FBgn0003310 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003310 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 54 of 4 1.30None
Head54 64 of 4 0.60Down
Eye23 34 of 4 0.26Down
Thoracicoabdominal ganglion104 144 of 4 1.20None
Salivary gland56 83 of 4 0.63Down
Crop52 24 of 4 0.60Down
Midgut28 04 of 4 0.30Down
Tubule18 23 of 4 0.20Down
Hindgut51 24 of 4 0.60Down
Heart25 33 of 4 0.29Down
Fat body33 64 of 4 0.37Down
Ovary304 04 of 4 3.40Up
Testis5 13 of 4 0.10Down
Male accessory glands55 14 of 4 0.60Down
Virgin spermatheca25 44 of 4 0.28Down
Mated spermatheca25 14 of 4 0.28Down
Adult carcass26 34 of 4 0.30Down
Larval CNS152 144 of 4 1.69Up
Larval Salivary gland79 54 of 4 0.88None
Larval midgut34 24 of 4 0.38Down
Larval tubule21 24 of 4 0.20Down
Larval hindgut39 24 of 4 0.44Down
Larval fat body21 04 of 4 0.20Down
Larval trachea45 84 of 4 0.50Down
Larval carcass37 34 of 4 0.41Down
S2 cells (growing)161 54 of 4 1.78Up
Whole fly90 54 of 4

Looking for CG4385-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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