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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4386-RA through 18771 annotations produced 1 hits



(CG4386):

Annotation Number : CG4386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034661
Gbrowse : chr2R:17686831-17688405 (-) // 100.0 //
Probeset : 1638473_at
Accessions : protein= NP_611611;, nucleotide= NM_137767;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034661.
BDGP gene expression has embryonic in situ data for CG4386: 15 pix of staining in 2 body parts.
Homophila reports that CG4386 is a close match (9e-11) to human gene BF;CFB;GBG (NP_001701), a gene associated with {Macular degeneration, age-related, reduced risk of}, 603075 (3).
VDRC has 3 RNAi stocks for FBgn0034661 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head3 ± 10 of 4 1.20None
Eye7 ± 22 of 4 2.61None
Thoracicoabdominal ganglion3 ± 10 of 4 1.20None
Salivary gland2 ± 00 of 4 0.73None
Crop2 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 0.70Down
Hindgut2 ± 10 of 4 1.00None
Heart1 ± 00 of 4 0.70None
Fat body4 ± 20 of 4 1.66None
Ovary0 ± 00 of 4 0.10Down
Testis5 ± 10 of 4 2.00None
Male accessory glands3 ± 20 of 4 1.30None
Virgin spermatheca3 ± 10 of 4 1.19None
Mated spermatheca3 ± 10 of 4 1.31None
Adult carcass3 ± 10 of 4 1.30None
Larval CNS7 ± 10 of 4 2.69Up
Larval Salivary gland1 ± 00 of 4 0.39None
Larval midgut8 ± 20 of 4 3.01None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut8 ± 00 of 4 3.01Up
Larval fat body2 ± 10 of 4 0.70None
Larval trachea776 ± 714 of 4277.41Up
Larval carcass25 ± 24 of 4 9.26Up
S2 cells (growing)0 ± 00 of 4 0.17Down
Whole fly2 ± 00 of 4

Looking for CG4386-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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