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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4389-RB through 18771 annotations produced 1 hits



(CG4389):

Annotation Number : CG4389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028479
Gbrowse : chr2L:9573572-9576768 (-) // 100.0 //
Probeset : 1635745_a_at
Accessions : protein= NP_609299; /// NP_723470; /// NP_723471;, nucleotide= NM_135455; /// NM_164860; /// NM_164861;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase acti
FlyMine data for FBgn0028479.
BDGP gene expression has embryonic in situ data for BcDNA:GH12558: 4 pix of staining in 1 body parts.
Homophila reports that CG4389 is a close match (1e-38) to human gene HADHSC;SCHAD;HHF4 (NP_005318), a gene associated with 3-hydroxyacyl-CoA dehydrogenase deficiency, 231530 (3);Hyperinsulinemic hypoglycemia, familial, 4, 609975 (3).
TRiP has 1 RNAi stocks for FBgn0028479 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain295 ± 104 of 4 0.30Down
Head1444 ± 514 of 4 1.30Up
Eye801 ± 794 of 4 0.73Down
Thoracicoabdominal ganglion406 ± 154 of 4 0.40Down
Salivary gland1162 ± 344 of 4 1.06None
Crop2127 ± 944 of 4 1.90Up
Midgut888 ± 254 of 4 0.80Down
Tubule1089 ± 554 of 4 1.00None
Hindgut1638 ± 554 of 4 1.50Up
Heart2194 ± 624 of 4 2.00Up
Fat body3375 ± 1784 of 4 3.08Up
Ovary1112 ± 84 of 4 1.00None
Testis142 ± 44 of 4 0.10Down
Male accessory glands818 ± 324 of 4 0.70Down
Virgin spermatheca3490 ± 1224 of 4 3.18Up
Mated spermatheca3616 ± 1794 of 4 3.30Up
Adult carcass1985 ± 694 of 4 1.80Up
Larval CNS716 ± 314 of 4 0.65Down
Larval Salivary gland1522 ± 1004 of 4 1.39Up
Larval midgut1358 ± 304 of 4 1.24Up
Larval tubule899 ± 574 of 4 0.80Down
Larval hindgut1226 ± 164 of 4 1.12None
Larval fat body2139 ± 2044 of 4 1.90Up
Larval trachea1123 ± 1024 of 4 1.02None
Larval carcass1327 ± 274 of 4 1.21Up
S2 cells (growing)1150 ± 124 of 4 1.05None
Whole fly1097 ± 504 of 4

Looking for CG4389-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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