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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4393-RA through 18771 annotations produced 1 hits



(CG4393):

Annotation Number : CG4393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039075
Gbrowse : chr3R:19203310-19208255 (-) // 100.0 //
Probeset : 1638231_at
Accessions : protein= NP_651143;, nucleotide= NM_142886;
FlyMine data for FBgn0039075.
Homophila reports that CG4393 is a close match (5e-11) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG4393 interacts with CG5708 CG8854 .
VDRC has 1 RNAi stocks for FBgn0039075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 03 of 4 9.50Up
Head4 10 of 4 1.40None
Eye1 00 of 4 0.40None
Thoracicoabdominal ganglion13 40 of 4 4.80None
Salivary gland14 50 of 4 5.04None
Crop50 24 of 418.00Up
Midgut3 00 of 4 1.40None
Tubule9 00 of 4 3.40Up
Hindgut39 41 of 414.10Up
Heart6 20 of 4 2.26None
Fat body2 10 of 4 1.03None
Ovary0 00 of 4 0.30None
Testis3 10 of 4 1.20None
Male accessory glands21 20 of 4 7.70Up
Virgin spermatheca1 00 of 4 0.49None
Mated spermatheca7 20 of 4 2.80None
Adult carcass9 40 of 4 3.30None
Larval CNS13 41 of 4 4.74Up
Larval Salivary gland4 20 of 4 1.68None
Larval midgut8 20 of 4 3.14None
Larval tubule19 20 of 4 7.20Up
Larval hindgut11 10 of 4 4.20Up
Larval fat body5 40 of 4 2.00None
Larval trachea1 10 of 4 0.56None
Larval carcass1 00 of 4 0.61None
S2 cells (growing)1 00 of 4 0.46None
Whole fly2 10 of 4

Looking for CG4393-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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