FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4396-RA through 18771 annotations produced 1 hits

Found in NEurons (fne):

Annotation Number : CG4396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086675
Gbrowse : chrX:12836632-12839828 (+) // 99.45 //
Probeset : 1633852_at
Accessions : protein= NP_001096965; /// NP_572842;, nucleotide= NM_001103495; /// NM_132614;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0086675.
TRiP has 1 RNAi stocks for FBgn0086675 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086675 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	993 ± 17	4 of 4	22.10	Up
Head	206 ± 24	4 of 4	4.60	Up
Eye	134 ± 20	4 of 4	2.98	Up
Thoracicoabdominal ganglion	1101 ± 20	4 of 4	24.50	Up
Salivary gland	4 ± 1	0 of 4	0.10	Down
Crop	9 ± 1	1 of 4	0.20	Down
Midgut	4 ± 1	1 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	2 ± 0	0 of 4	0.10	Down
Heart	7 ± 2	2 of 4	0.16	Down
Fat body	14 ± 8	3 of 4	0.33	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	5 ± 0	1 of 4	0.10	Down
Male accessory glands	6 ± 1	0 of 4	0.10	Down
Virgin spermatheca	22 ± 2	4 of 4	0.50	Down
Mated spermatheca	31 ± 10	4 of 4	0.69	None
Adult carcass	20 ± 2	4 of 4	0.50	Down
Larval CNS	1170 ± 54	4 of 4	26.03	Up
Larval Salivary gland	1 ± 0	0 of 4	0.03	Down
Larval midgut	2 ± 1	0 of 4	0.05	Down
Larval tubule	2 ± 0	0 of 4	0.10	Down
Larval hindgut	3 ± 1	0 of 4	0.07	Down
Larval fat body	7 ± 0	0 of 4	0.20	Down
Larval trachea	7 ± 2	2 of 4	0.18	Down
Larval carcass	9 ± 0	4 of 4	0.22	Down
S2 cells (growing)	3 ± 0	1 of 4	0.07	Down
Whole fly	45 ± 4	4 of 4

Looking for CG4396-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720