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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4404-RA through 18771 annotations produced 1 hits



(CG4404):

Annotation Number : CG4404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030432
Gbrowse : chrX:12797775-12800068 (-) // 100.0 //
Probeset : 1630130_at
Accessions : protein= NP_572838;, nucleotide= NM_132610;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0030432.
BDGP gene expression has embryonic in situ data for CG4404: 15 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0030432 available for purchase.
VDRC has 4 RNAi stocks for FBgn0030432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain438 ± 34 of 4 1.20None
Head343 ± 194 of 4 0.90None
Eye440 ± 284 of 4 1.20None
Thoracicoabdominal ganglion385 ± 94 of 4 1.10None
Salivary gland567 ± 204 of 4 1.55Up
Crop640 ± 284 of 4 1.70Up
Midgut231 ± 44 of 4 0.60Down
Tubule311 ± 104 of 4 0.90Down
Hindgut379 ± 44 of 4 1.00None
Heart375 ± 164 of 4 1.02None
Fat body296 ± 544 of 4 0.81None
Ovary660 ± 234 of 4 1.80Up
Testis26 ± 14 of 4 0.10Down
Male accessory glands522 ± 124 of 4 1.40Up
Virgin spermatheca532 ± 424 of 4 1.45Up
Mated spermatheca532 ± 254 of 4 1.45Up
Adult carcass253 ± 154 of 4 0.70Down
Larval CNS56 ± 74 of 4 0.15Down
Larval Salivary gland11 ± 01 of 4 0.03Down
Larval midgut4 ± 10 of 4 0.01Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.01Down
Larval fat body10 ± 13 of 4 0.00Down
Larval trachea14 ± 84 of 4 0.04Down
Larval carcass4 ± 11 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly366 ± 254 of 4

Looking for CG4404-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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