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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4408-RA through 18771 annotations produced 1 hits



(CG4408):

Annotation Number : CG4408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039073
Gbrowse : chr3R:19187610-19189760 (-) // 100.0 //
Probeset : 1626857_at
Accessions : protein= NP_651141;, nucleotide= NM_142884;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0039073.
BDGP gene expression has embryonic in situ data for CG4408: 24 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0039073 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.10Down
Head560 594 of 4 1.90Up
Eye270 434 of 4 0.90None
Thoracicoabdominal ganglion18 14 of 4 0.10Down
Salivary gland26 42 of 4 0.09Down
Crop16 24 of 4 0.10Down
Midgut7 00 of 4 0.00Down
Tubule17 42 of 4 0.10Down
Hindgut38 24 of 4 0.10Down
Heart608 324 of 4 2.03Up
Fat body1178 1054 of 4 3.93Up
Ovary326 114 of 4 1.10None
Testis3 10 of 4 0.00Down
Male accessory glands16 12 of 4 0.10Down
Virgin spermatheca1000 134 of 4 3.34Up
Mated spermatheca809 404 of 4 2.70Up
Adult carcass549 544 of 4 1.80Up
Larval CNS49 194 of 4 0.16Down
Larval Salivary gland33 24 of 4 0.11Down
Larval midgut25 04 of 4 0.09Down
Larval tubule39 44 of 4 0.10Down
Larval hindgut56 54 of 4 0.19Down
Larval fat body3185 3674 of 410.60Up
Larval trachea13 44 of 4 0.05Down
Larval carcass36 84 of 4 0.12Down
S2 cells (growing)8 11 of 4 0.03Down
Whole fly299 164 of 4

Looking for CG4408-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime