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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4412-RA through 18771 annotations produced 1 hits



ATPase coupling factor 6 /// pointed (ATPsyn-Cf6 /// pnt):

Annotation Number : CG4412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016119
Gbrowse : chr3R:19180976-19181782 (-) // 99.27 //
Probeset : 1641328_at
Accessions : protein= NP_477194;, nucleotide= NM_057846;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation //
Interpro : engulfment // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from genetic interaction /// 000
FlyMine data for FBgn0016119.
BioGrid reports that CG4412 interacts with CG9900 .
VDRC has 2 RNAi stocks for FBgn0016119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1884 454 of 4 0.90Down
Head2531 1834 of 4 1.10None
Eye3012 1014 of 4 1.37Up
Thoracicoabdominal ganglion2162 864 of 4 1.00None
Salivary gland4667 924 of 4 2.12Up
Crop2270 1304 of 4 1.00None
Midgut2850 1024 of 4 1.30Up
Tubule2913 334 of 4 1.30Up
Hindgut3856 1094 of 4 1.70Up
Heart3851 1494 of 4 1.75Up
Fat body3526 1854 of 4 1.60Up
Ovary1267 154 of 4 0.60Down
Testis542 64 of 4 0.20Down
Male accessory glands1718 234 of 4 0.80Down
Virgin spermatheca2998 1384 of 4 1.36Up
Mated spermatheca2864 694 of 4 1.30Up
Adult carcass4402 1584 of 4 2.00Up
Larval CNS1425 1014 of 4 0.65Down
Larval Salivary gland2544 1444 of 4 1.15None
Larval midgut2210 554 of 4 1.00None
Larval tubule1905 1484 of 4 0.90None
Larval hindgut2855 794 of 4 1.29Up
Larval fat body828 684 of 4 0.40Down
Larval trachea2328 1154 of 4 1.06None
Larval carcass3002 2574 of 4 1.36Up
S2 cells (growing)1020 284 of 4 0.46Down
Whole fly2205 864 of 4

Looking for CG4412-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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