FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG4434-RA through 18771 annotations produced 1 hits

(CG4434):

Annotation Number : CG4434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039071
Gbrowse : chr3R:19113938-19115911 (-) // 99.78 //
Probeset : 1632509_at
Accessions : protein= NP_651140;, nucleotide= NM_142883;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004353 // glutamate dehydrogenase [NAD(P)+] a
FlyMine data for FBgn0039071.
Homophila reports that CG4434 is a close match (8e-131) to human gene GLUD1 (NP_005262), a gene associated with Hyperinsulinism-hyperammonemia syndrome, 606762 (3).
BioGrid reports that CG4434 interacts with CG5383 .
VDRC has 3 RNAi stocks for FBgn0039071 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.00	Down
Head	2 ± 1	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	3 ± 0	1 of 4	0.00	Down
Salivary gland	7 ± 3	0 of 4	0.04	Down
Crop	1 ± 0	0 of 4	0.00	Down
Midgut	2 ± 1	0 of 4	0.00	Down
Tubule	3 ± 0	0 of 4	0.00	Down
Hindgut	1 ± 1	0 of 4	0.00	Down
Heart	0 ± 0	0 of 4	0.00	Down
Fat body	2 ± 1	0 of 4	0.01	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	1808 ± 39	4 of 4	8.70	Up
Male accessory glands	5 ± 2	0 of 4	0.00	Down
Virgin spermatheca	1 ± 0	0 of 4	0.01	Down
Mated spermatheca	6 ± 3	0 of 4	0.03	Down
Adult carcass	12 ± 5	1 of 4	0.10	Down
Larval CNS	2 ± 1	0 of 4	0.01	Down
Larval Salivary gland	4 ± 1	0 of 4	0.02	Down
Larval midgut	5 ± 1	0 of 4	0.03	Down
Larval tubule	3 ± 1	0 of 4	0.00	Down
Larval hindgut	2 ± 1	0 of 4	0.01	Down
Larval fat body	178 ± 99	4 of 4	0.90	None
Larval trachea	9 ± 13	1 of 4	0.04	Down
Larval carcass	4 ± 1	0 of 4	0.02	Down
S2 cells (growing)	4 ± 1	0 of 4	0.02	Down
Whole fly	208 ± 11	4 of 4

Looking for CG4434-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720