Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4438-RA through 18771 annotations produced 1 hits



(CG4438):

Annotation Number : CG4438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032115
Gbrowse : chr2L:9397176-9397764 (-) // 100.0 //
Probeset : 1625626_at
Accessions : protein= NP_609286;, nucleotide= NM_135442;
FlyMine data for FBgn0032115.
VDRC has 5 RNAi stocks for FBgn0032115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye6 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland21 ± 40 of 4 0.32Down
Crop6 ± 30 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 00 of 4 0.07Down
Fat body11 ± 51 of 4 0.18Down
Ovary1 ± 00 of 4 0.00Down
Testis703 ± 204 of 410.60Up
Male accessory glands13 ± 40 of 4 0.20Down
Virgin spermatheca17 ± 13 of 4 0.26Down
Mated spermatheca19 ± 63 of 4 0.29Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS5 ± 00 of 4 0.08Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut7 ± 20 of 4 0.10Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body167 ± 694 of 4 2.50None
Larval trachea7 ± 71 of 4 0.11Down
Larval carcass4 ± 20 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly66 ± 84 of 4

Looking for CG4438-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime