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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4446-RA through 18771 annotations produced 1 hits



(CG34456):

Annotation Number : CG4446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085485
Gbrowse : chr3L:9353411-9355769 (+) // 100.0 //
Probeset : 1627596_at
Accessions : protein= NP_001097559;, nucleotide= NM_001104089;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity
FlyMine data for FBgn0085485.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head22 60 of 4 2.80None
Eye27 31 of 4 3.39Up
Thoracicoabdominal ganglion0 00 of 4 0.10None
Salivary gland5 10 of 4 0.61None
Crop0 00 of 4 0.10None
Midgut7 10 of 4 0.90None
Tubule303 504 of 437.50Up
Hindgut1 00 of 4 0.20None
Heart0 00 of 4 0.06None
Fat body6 70 of 4 0.84None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.10None
Male accessory glands1 00 of 4 0.10None
Virgin spermatheca3 00 of 4 0.38None
Mated spermatheca3 10 of 4 0.40None
Adult carcass4 20 of 4 0.50None
Larval CNS0 00 of 4 0.10None
Larval Salivary gland3 20 of 4 0.39None
Larval midgut2 00 of 4 0.34None
Larval tubule172 164 of 421.30Up
Larval hindgut1 00 of 4 0.15None
Larval fat body1 00 of 4 0.20None
Larval trachea0 00 of 4 0.07None
Larval carcass0 00 of 4 0.12None
S2 cells (growing)0 00 of 4 0.08None
Whole fly8 30 of 4

Looking for CG4446-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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