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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4448-RA through 18771 annotations produced 1 hits



CG4448 (wda):

Annotation Number : CG4448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039067
Gbrowse : chr3R:19080791-19083779 (-) // 100.0 //
Probeset : 1627455_at
Accessions : protein= NP_651136;, nucleotide= NM_142879;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0030528 // transcription regulator activity // inferred from electronic annotation
FlyMine data for FBgn0039067.
Homophila reports that CG4448 is a close match (8e-13) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
TRiP has 2 RNAi stocks for FBgn0039067 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 ± 34 of 4 1.30Up
Head46 ± 24 of 4 0.60Down
Eye54 ± 24 of 4 0.67Down
Thoracicoabdominal ganglion104 ± 104 of 4 1.30None
Salivary gland75 ± 54 of 4 0.93None
Crop58 ± 34 of 4 0.70Down
Midgut41 ± 34 of 4 0.50Down
Tubule89 ± 54 of 4 1.10None
Hindgut39 ± 24 of 4 0.50Down
Heart43 ± 14 of 4 0.53Down
Fat body40 ± 54 of 4 0.50Down
Ovary197 ± 44 of 4 2.40Up
Testis61 ± 14 of 4 0.80Down
Male accessory glands76 ± 44 of 4 0.90None
Virgin spermatheca70 ± 34 of 4 0.86None
Mated spermatheca73 ± 54 of 4 0.90None
Adult carcass41 ± 34 of 4 0.50Down
Larval CNS115 ± 24 of 4 1.42Up
Larval Salivary gland65 ± 24 of 4 0.80Down
Larval midgut34 ± 34 of 4 0.43Down
Larval tubule53 ± 44 of 4 0.70Down
Larval hindgut42 ± 24 of 4 0.52Down
Larval fat body42 ± 34 of 4 0.50Down
Larval trachea66 ± 84 of 4 0.82Down
Larval carcass44 ± 34 of 4 0.55Down
S2 cells (growing)53 ± 24 of 4 0.66Down
Whole fly81 ± 14 of 4

Looking for CG4448-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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