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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4455-RA through 18771 annotations produced 1 hits



(CG4455):

Annotation Number : CG4455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028506
Gbrowse : chr2L:16352935-16354545 (+) // 99.74 //
Probeset : 1637414_at
Accessions : protein= NP_609791;, nucleotide= NM_135947;
FlyMine data for FBgn0028506.
BDGP gene expression has embryonic in situ data for BG:DS09218.3: 34 pix of staining in 16 body parts.
VDRC has 2 RNAi stocks for FBgn0028506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.20Down
Head40 24 of 4 0.30Down
Eye53 34 of 4 0.39Down
Thoracicoabdominal ganglion22 24 of 4 0.20Down
Salivary gland71 34 of 4 0.51Down
Crop150 34 of 4 1.10None
Midgut25 14 of 4 0.20Down
Tubule30 34 of 4 0.20Down
Hindgut82 44 of 4 0.60Down
Heart23 14 of 4 0.17Down
Fat body36 54 of 4 0.26Down
Ovary336 84 of 4 2.40Up
Testis23 14 of 4 0.20Down
Male accessory glands167 74 of 4 1.20None
Virgin spermatheca43 34 of 4 0.31Down
Mated spermatheca57 54 of 4 0.41Down
Adult carcass57 74 of 4 0.40Down
Larval CNS427 254 of 4 3.09Up
Larval Salivary gland237 94 of 4 1.71Up
Larval midgut33 34 of 4 0.24Down
Larval tubule53 34 of 4 0.40Down
Larval hindgut133 34 of 4 0.96None
Larval fat body53 34 of 4 0.40Down
Larval trachea555 244 of 4 4.01Up
Larval carcass301 414 of 4 2.18Up
S2 cells (growing)588 54 of 4 4.25Up
Whole fly138 114 of 4

Looking for CG4455-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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