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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4457-RA through 18771 annotations produced 1 hits



chr3L:7340408-7341114 (-) // 100.0 // (Signal recognition particle protein 19):

Annotation Number : CG4457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638272_at
Accessions : protein= , nucleotide= NP_477135;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0005786 // signal recognition particle
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 ± 74 of 4 0.80None
Head268 ± 84 of 4 1.00None
Eye275 ± 34 of 4 1.03None
Thoracicoabdominal ganglion221 ± 164 of 4 0.80None
Salivary gland961 ± 234 of 4 3.61Up
Crop310 ± 134 of 4 1.20None
Midgut401 ± 104 of 4 1.50Up
Tubule188 ± 134 of 4 0.70Down
Hindgut233 ± 74 of 4 0.90None
Heart240 ± 94 of 4 0.90None
Fat body316 ± 404 of 4 1.19None
Ovary368 ± 104 of 4 1.40Up
Testis115 ± 14 of 4 0.40Down
Male accessory glands1046 ± 234 of 4 3.90Up
Virgin spermatheca478 ± 254 of 4 1.79Up
Mated spermatheca527 ± 194 of 4 1.98Up
Adult carcass249 ± 154 of 4 0.90None
Larval CNS375 ± 74 of 4 1.41Up
Larval Salivary gland1677 ± 934 of 4 6.29Up
Larval midgut258 ± 54 of 4 0.97None
Larval tubule244 ± 74 of 4 0.90None
Larval hindgut267 ± 184 of 4 1.00None
Larval fat body416 ± 354 of 4 1.60Up
Larval trachea489 ± 494 of 4 1.84Up
Larval carcass412 ± 134 of 4 1.55Up
S2 cells (growing)450 ± 14 of 4 1.69Up
Whole fly266 ± 254 of 4

Looking for CG4457-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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