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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG4459-RA through 18771 annotations produced 1 hits



(CG4459):

Annotation Number : CG4459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038753
Gbrowse : chr3R:15752157-15754317 (-) // 100.0 //
Probeset : 1623125_at
Accessions : protein= NP_650850;, nucleotide= NM_142593;
Interpro : 0008513 // secondary active organic cation transmembrane transporter activity // inferred from sequence or structural si
FlyMine data for FBgn0038753.
Homophila reports that CG4459 is a close match (8e-12) to human gene OAT4L;SLC22A12;URAT1 (NP_653186), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 1 RNAi stocks for FBgn0038753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 0.90None
Head5 ± 00 of 4 0.70Down
Eye5 ± 00 of 4 0.63Down
Thoracicoabdominal ganglion9 ± 11 of 4 1.20None
Salivary gland5 ± 10 of 4 0.70None
Crop5 ± 20 of 4 0.60None
Midgut5 ± 00 of 4 0.60Down
Tubule6 ± 20 of 4 0.80None
Hindgut446 ± 174 of 455.50Up
Heart2 ± 00 of 4 0.34Down
Fat body7 ± 40 of 4 0.92None
Ovary2 ± 10 of 4 0.30Down
Testis2 ± 00 of 4 0.30Down
Male accessory glands7 ± 10 of 4 0.90None
Virgin spermatheca4 ± 10 of 4 0.53None
Mated spermatheca1 ± 10 of 4 0.22Down
Adult carcass5 ± 30 of 4 0.70None
Larval CNS3 ± 00 of 4 0.46Down
Larval Salivary gland6 ± 21 of 4 0.80None
Larval midgut9 ± 10 of 4 1.19None
Larval tubule15 ± 02 of 4 1.90Up
Larval hindgut240 ± 154 of 429.83Up
Larval fat body3 ± 10 of 4 0.40Down
Larval trachea24 ± 54 of 4 3.03Up
Larval carcass12 ± 10 of 4 1.57Up
S2 cells (growing)2 ± 00 of 4 0.30Down
Whole fly8 ± 01 of 4

Looking for CG4459-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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